Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00740 ATGCCGGTGGCACTTAAGCACTTCAGACCGGGTTCAAATGATCCTAAAAAGTTCCTGAACGAGATGGAGGTGGCTATCAAGCGCCACAAACCGGGTTCAAAGCAGGGCGCCGAAGAGTTTCTGAACGAGATCGAGTTGCTCTCGCAGCTCCGCCATCGCAATCTCGTTCCACTCATCGGTTACTGCAACAGCAAGGAGGAGCTGATCCTGGTCTATAGTTTCATGGCACAATATTATAAACGACAATATTTGACGGAAAAGTCTGACGTGTATTCTTTCGGGATAGTGTTGTTTGAGGTACTTTGCGCTCGTCCGCCTCTGATCCGCACAGCGGAGCCGATACAAGAGTCGCTTTGTAATTGGGTTCGGTACTGTTACCAAAAAGGGACCATGGCACAGATATTGGACCCCAGCTTGAATGGGAAGATCGCGCCCAAATGCTTTAGAATGTTTTGCAAGATTGGGGTGAGTTGTTTGTCGGAAATTGGGACGCTTAGACCGTCCATGAATGATGTGGTTGGGCAGCTTAAGTATGCTCTGCAACTACAAGAAATTGCAGATATTAGCGAGGCTCATTCTAATACCAAAAGCCCATTGTCTGGTTAG 606 0.4785 MPVALKHFRPGSNDPKKFLNEMEVAIKRHKPGSKQGAEEFLNEIELLSQLRHRNLVPLIGYCNSKEELILVYSFMAQYYKRQYLTEKSDVYSFGIVLFEVLCARPPLIRTAEPIQESLCNWVRYCYQKGTMAQILDPSLNGKIAPKCFRMFCKIGVSCLSEIGTLRPSMNDVVGQLKYALQLQEIADISEAHSNTKSPLSG 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00740 201 Gene3D Phosphorylase Kinase; domain 1 2 76 - -
Vimu8g00740 201 Pfam Protein tyrosine and serine/threonine kinase 17 86 IPR001245 GO:0004672|GO:0006468
Vimu8g00740 201 PANTHER OS07G0166700 PROTEIN 22 77 IPR045272 GO:0004714|GO:0006468
Vimu8g00740 201 SMART tyrkin_6 18 176 IPR020635 GO:0004713|GO:0006468
Vimu8g00740 201 SUPERFAMILY Protein kinase-like (PK-like) 19 175 IPR011009 -
Vimu8g00740 201 Gene3D Transferase(Phosphotransferase) domain 1 77 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00740 Vimu-Chr8 14264594 14265487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00740 23 84 Receptor kinase-like Gene Family AT3G51550 58.065 1.80e-16 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu8g00740 PK_Tyr_Ser-Thr 5.7e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00740 - - var:108345831 248.44