Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00738 ATGTTGATGCCTGAGTACCTTAGTGCATTAAGTGAACGACTTAGATATCTCGGTGGGGAAAGGGCTAAGCTGGAGATGGAGTTCAGTGGTGGAAGGGTCAAGTTGGACCAGAAAATCCGTGATGGAAAGGTCGAGCTGGAATTGGAGATTCGTCGTGGAAGGGTGCTGGAGTTGGAGATTCATGGTGGAAGGGTGGAGCTGGAGTTACATATGCATGGTGGAAGGACTGAGCTAGATCTAAAGATCCACGGTGAAAGCTACAAATCCATGGTGAAAGGGTGGAGTTCTAGCTACATATCCATGGTGAAAACTATAAATGTTGCGGCACCACTGAAACACCCTACAACGGTGAAAGAAAATGGGCAGGAGGGTATTCTTCTCGTTCTCGTTTCCTTATCCAAGTCCAATCCATGGACACCAAAGCTGCCAACCAACACGCTCATCCGGCGCTTCTCCATCGTCACGATCAAAGCCGCCACCAACAACTTCGACGACGCTTCCGTCGTCGGCTTCGGGGGATTCGGCCACGTGTATAGGGGCTTAATCCGCGGAATTTTCATCCCAGTGGCTCATAAGCACTTAATACAGGGTTCGAATGGCGCTGAAAAATTCTCGAAGGTGGCTATCAAGCGCCACAAACCGGGTTCAAAGCAGGGCGCTGAAGAGTTTCTGAACGAGATCAAAATGCTCTCGCAGCTCCGCCATCGCAATCTCGTTCGACTCATCGGTTACTGCAAAACCAAGAAGGAGATGATCCTGGTCTACAATTTCATGGCACGTGGCAACCTCCGTGACCATCTCTACAACAGCGACAAACCTTCCTTGCCATGGAAGCGACGCTTACAGATCTGTATCGACGTTGCGCACGCGCTGCATTATCTTCACTGCTGCGCCAATAAATACTCGATAATCCACAGCGATGTGAAAACCACGAACATCTTGTTGGATGAGGAGTGGGTGGCCAAGGTATCGGACTTTGGACTTTCCAAAATTGGGTCCATGGAAGAGTCCAAGGTCAATGTCTGCGCCACCGCTGTGAAGGGTAGCTTTGGATATATAGATCCAGAATATCATAGACGACAATATTTGACGGAAAAGTCTGACGTGTACTCTTTCGGGGTAGTGTTATTCGAGGTACTGTGCGCTCGCCCGCCTCTCATTCGCACGGCGGATCCGAGACAAGAATCACTTGGAAATTGGGTTAGGTACTGTTACCAAAATGGAACAATGGCAGAGATAATGGACCCCACATTGAGTGGAAAGATTGCGCCAAATTGCTTTAGAATGTTTTGCGATACTGGGGTGAGTTGTTTATCAGAAATTGGGACGCAGAGACCGTCTATGAACGACGTCGTTCACATGCTAGGGTATGCCCTACAACTACAAGAAAAGGCAGAAATTAGTGTGGCGCATTCTAGCGGCAAAATTTCATTATGTAGTTAG 1443 0.4851 MLMPEYLSALSERLRYLGGERAKLEMEFSGGRVKLDQKIRDGKVELELEIRRGRVLELEIHGGRVELELHMHGGRTELDLKIHGESYKSMVKGWSSSYISMVKTINVAAPLKHPTTVKENGQEGILLVLVSLSKSNPWTPKLPTNTLIRRFSIVTIKAATNNFDDASVVGFGGFGHVYRGLIRGIFIPVAHKHLIQGSNGAEKFSKVAIKRHKPGSKQGAEEFLNEIKMLSQLRHRNLVRLIGYCKTKKEMILVYNFMARGNLRDHLYNSDKPSLPWKRRLQICIDVAHALHYLHCCANKYSIIHSDVKTTNILLDEEWVAKVSDFGLSKIGSMEESKVNVCATAVKGSFGYIDPEYHRRQYLTEKSDVYSFGVVLFEVLCARPPLIRTADPRQESLGNWVRYCYQNGTMAEIMDPTLSGKIAPNCFRMFCDTGVSCLSEIGTQRPSMNDVVHMLGYALQLQEKAEISVAHSSGKISLCS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00738 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 303 315 IPR008271 GO:0004672|GO:0006468
Vimu8g00738 480 Gene3D Phosphorylase Kinase; domain 1 147 257 - -
Vimu8g00738 480 ProSiteProfiles Protein kinase domain profile. 163 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00738 480 FunFam Receptor-like protein kinase FERONIA 258 476 - -
Vimu8g00738 480 Pfam Protein tyrosine and serine/threonine kinase 168 455 IPR001245 GO:0004672|GO:0006468
Vimu8g00738 480 Gene3D Transferase(Phosphotransferase) domain 1 258 475 - -
Vimu8g00738 480 SMART serkin_6 163 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00738 480 PANTHER OS07G0166700 PROTEIN 148 462 IPR045272 GO:0004714|GO:0006468
Vimu8g00738 480 SUPERFAMILY Protein kinase-like (PK-like) 137 455 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00738 Vimu-Chr8 14254230 14256363 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00738 138 466 Receptor kinase-like Gene Family AT3G51550 57.576 1.41e-120 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu8g00738 PK_Tyr_Ser-Thr 1.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00738 - - vun:114181146 580.482