Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00732 ATGGCTATCTTAACACTCTTCTTCTTTCTTCTACCCTTCTCCACACACCTCCAAGCCGCCTACATCCCAGAGGAAGTTTTCACCATCAATTGCGGCACCACTGGGAACTCCTCCGACGGTCAAAGAACGTGGACCGGCGACGAAGACACAAAGTACTTATCTTCGCAAGACACCGCCGTTTCAGACAAGGCGCCAACACAGTCTCCTTCCGCCAATCAAATCCCCTTCTCCACTGCACGCTTGTCAAGTTCCCAATTCAATTACTCCTTCCCTGTCTCCCCAGGCACCAAATTCATTCGCCTCTTCTTCTACCCTGCAGACTACCCTTCCTTTCCCCGCACCCACGCATCCTTCTCCGTTCATTCCAACCAATTTATTCTCCTCAACGATTTCAACGCCTCTCTTAACGCCGACGCTCAAGCCACCGACACTATCTTCAAGGAATACGTGGTCAACGTTAACGATGGTGAGAGGCTTATCCTCATCTTCACTCCCTCGCATCCAAACTCTTACGCTTTCATCAATGGAATCGAGGTACTTTCCATGCCAACCGATTTATATTACACAACAAATGACACAGGCTTCACGACCGTCGGAACTACCACGCTGTACAGTGTTGGAGCCAGCTTTGCTCTTCAGACTGAGTATAGAATCAAAGCTGGATGGCAAGTAGAAATCCCACCACAAAAAGACACTGGTTTGTTCAGGAATTGGGTTAACGAAAAACCTTATTTTATTGAACAAAATTCTCAGTTGAATGATGTATCAATTGACTACAGTGATATGACGATAACCGTGAATCCTGATTACGTGGCACCGAAGAAACTTTTCACATCAGCCCGTGGCATGGGCACAAACGCCACTTTTAACAGGATGAGAAACCTCACTTGGGAGTTCCCCGTTGATTGTGGCTTCACTTACGTTCTCAGACTCCACTTCTGCGAGCTTGATCCCAATATTAATGACATGGGTGACAGGCGATTCTCAATTTACATAGCGAGTCAGTTGGCTGATGGGCGTGCAGATGTAATGAAATGGAGTCAGAAACAAAAAGGTCTAGCTGTGTATAAAAACTACGCCGTTTTAATTGTCAATAATGGTACTCGAAAGAAGTTTAATCTCTCGCTTCAAATGCATCCTTACGAACACTCTGAGTATTCGAGATACAGCGACGCCTTATTGAACGGTGTTGAGATTTTCAAAGTCAGCGAGGCCGGGTCAAACAATCTCGCAGGACCCAACCCAGACCCGTCTCAAACTCCAAACAACAGCATTCATGGCCAAAACGGAAAGATCCGCAGGGGAAGTGGAACTGTGATAATTTGCGTCGTCGTGGGGGTGGTATCCGGCGTCGTTCTGATTTCTCTTGTCGTTTTCTTTGTCGCATTTTTACGATACGAGAGAACCACTAATACAAAGAGCAAGGATTACAAGACCAAGTCAACCACCACGCGGAATTCCTCCCTCCCGACAGATCTCTGCAGCCGCTTCTCTCTCGACGAGATTAGAGCGGCCACCCAAAACTTCGACAAAGTCATTGGCACCGGAGGATTCGGCCAGGTGTACAAAGGCTATATAGACGAGGGCTCCATTCCCGTCGCCATCAAGCGCCTTAAACGGGATTCGCAGCAGGGGCCTCGCGAGTTCCTGAACGAAATCAAAATGCTCTCGCAACTACGCCACCTCAATGTGGTGTCCCTCATCGGCTACTGCAACGATAATAAGGAAATGATCCTTGTTTACGATTTCATGACACGTGGCAACCTCCGCGACCATCTGTACAACACGGACAATCCCCCTATCTCGTGGAAGCAGCGGTTGCATATCTGTATCGGCACGGCGCATGGACTGAACTATCTCCACACAGGAGCGAAGCACATGATCATCCACCGGGACGTGAAAACCACGAACATCCTATTGGATGATAAGTGGGTGGCAAAGGTTTCGGACTTCGGACTTTCAAGGCTGGGGCCTATTGGAACTTCGAAGACCCACGTCAGCACCGATGTGAAGGGTAGCTTCGGATATTTGGATCCTGAGTATTATAAACGATACCGTTTAACGGAAAAGTCCGACGTGTATTCTTTTGGGGTTGTGCTTTTTGAGATACTGTGTGGTCGTCCGCCTTTGATTCACAGTGCGGAGAGGCAACAGGTGTCGCTTTCTAATTGGGTGAGATATTGTTATCAAAGTGGAACCATAGCAGAGATTGTTGAGCCGACGTTGAAGAAGGAGATTGCAGCAGAGTGCTTAAAGAAGTTTTGTGAGATTGGGATGAGTTGTTTGTTGGAAGATGGGTCGCTGAGGCCGTCCATGGAGCATGTGGCGGCGATGCTAGAGTTTACTCTGGAGCTACAAGAAAGTGCGGAGCAGCGCCAAAATGTTAATGTTGCTATTCCTAACTGA 2406 0.4796 MAILTLFFFLLPFSTHLQAAYIPEEVFTINCGTTGNSSDGQRTWTGDEDTKYLSSQDTAVSDKAPTQSPSANQIPFSTARLSSSQFNYSFPVSPGTKFIRLFFYPADYPSFPRTHASFSVHSNQFILLNDFNASLNADAQATDTIFKEYVVNVNDGERLILIFTPSHPNSYAFINGIEVLSMPTDLYYTTNDTGFTTVGTTTLYSVGASFALQTEYRIKAGWQVEIPPQKDTGLFRNWVNEKPYFIEQNSQLNDVSIDYSDMTITVNPDYVAPKKLFTSARGMGTNATFNRMRNLTWEFPVDCGFTYVLRLHFCELDPNINDMGDRRFSIYIASQLADGRADVMKWSQKQKGLAVYKNYAVLIVNNGTRKKFNLSLQMHPYEHSEYSRYSDALLNGVEIFKVSEAGSNNLAGPNPDPSQTPNNSIHGQNGKIRRGSGTVIICVVVGVVSGVVLISLVVFFVAFLRYERTTNTKSKDYKTKSTTTRNSSLPTDLCSRFSLDEIRAATQNFDKVIGTGGFGQVYKGYIDEGSIPVAIKRLKRDSQQGPREFLNEIKMLSQLRHLNVVSLIGYCNDNKEMILVYDFMTRGNLRDHLYNTDNPPISWKQRLHICIGTAHGLNYLHTGAKHMIIHRDVKTTNILLDDKWVAKVSDFGLSRLGPIGTSKTHVSTDVKGSFGYLDPEYYKRYRLTEKSDVYSFGVVLFEILCGRPPLIHSAERQQVSLSNWVRYCYQSGTIAEIVEPTLKKEIAAECLKKFCEIGMSCLLEDGSLRPSMEHVAAMLEFTLELQESAEQRQNVNVAIPN 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00732 801 PANTHER OS03G0124300 PROTEIN-RELATED 2 472 IPR046957 GO:0004672
Vimu8g00732 801 Pfam Protein tyrosine and serine/threonine kinase 509 778 IPR001245 GO:0004672|GO:0006468
Vimu8g00732 801 Pfam Malectin-like domain 29 402 IPR024788 -
Vimu8g00732 801 CDD STKc_IRAK 513 780 - -
Vimu8g00732 801 FunFam FERONIA receptor-like kinase 26 183 - -
Vimu8g00732 801 ProSitePatterns Protein kinases ATP-binding region signature. 513 536 IPR017441 GO:0005524
Vimu8g00732 801 Gene3D Phosphorylase Kinase; domain 1 468 583 - -
Vimu8g00732 801 PIRSF TyrPK_CSF1-R 501 599 - -
Vimu8g00732 801 PIRSF TyrPK_CSF1-R 586 710 - -
Vimu8g00732 801 PIRSF TyrPK_CSF1-R 15 75 - -
Vimu8g00732 801 FunFam Receptor-like protein kinase FERONIA 584 799 - -
Vimu8g00732 801 FunFam FERONIA receptor-like kinase 210 403 - -
Vimu8g00732 801 FunFam receptor-like protein kinase FERONIA 470 583 - -
Vimu8g00732 801 SMART serkin_6 507 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00732 801 SUPERFAMILY Protein kinase-like (PK-like) 483 782 IPR011009 -
Vimu8g00732 801 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Vimu8g00732 801 MobiDBLite consensus disorder prediction 408 429 - -
Vimu8g00732 801 Gene3D - 211 403 - -
Vimu8g00732 801 Gene3D - 23 183 - -
Vimu8g00732 801 Gene3D Transferase(Phosphotransferase) domain 1 584 799 - -
Vimu8g00732 801 ProSiteProfiles Protein kinase domain profile. 507 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00732 Vimu-Chr8 14219802 14222207 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00732 19 791 Receptor kinase-like Gene Family AT3G51550 46.806 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu8g00732 Malectin_like 7.7e-38 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00732 - - var:108344516 1117.06