Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00725 ATGGCCTCTTCGGATGTTAATTGGGACAGGCTAGATAAAACGAAGTTCTTTGTCGTGGGAGCAGGACTCTTTACAGGTGTTACAGTAGCACTCTACCCGGTTTCTGTTGTGAAAACTAGGCTGCAGGTTGCTTCAAAGGATACTCCGGAGAGAAATGCATTATCTGTTGTGAAAGGATTACTTAAAACGGATGGCATCCGTGGTTTGTATAAAGGGTTTCTTACTGTTATGACTGGTACAATTCCTACCAGAATCATATTTCTTACTGCCTTGGAGACCACAAAGGTGGCTTCCCTCAGGATGCTGGAGCCATTTAGACTATCTGATACCACCCAGACTGCCATATCAAATGGAGTAGCAGGCATGACATCATCACTTTTGGCACAAGCTATGTTTGTTCCAATTGATGTGGTTAGCCAAAAGTTGATGGTGCAAGGATACTCAGGCCATACGCAATATAGGGGGGGTTTGGATGTTGCTCGTAAGGTGTTAAGGTCTGATGGCATTAGGGGATTATATAGAGGATTTGGTCTATCTGTCATGACTTATGTACCATCTAGTGCTGTGTGGTGGGCAAGTTATGGCTCAAGTAAACATTACTTATGGAGAATCTTGGGGGATAACTCCGGTGAGGAAGGCACTCCTAGTCTACAAAAGATTATGTTAGTTCAGGCTACTGGAGGGATCATTGCTGGTGCTACTGCATCCTCTATCACAACCCCGTTGGATACAATCAAGACACGGTTACAGGTCACTGGACTTGAAAAGAAAATCTCTGTAAAACAAGTTGTTAAAGATTTGATTCTTGAAGATGGTTGGAAAGGTTTATATAGAGGATTAGGTCCAAGGTTTTTCAGCATGTCAGCGTGGGGCACTTCAATGATTCTGGCTTATGAATATCTGAGTAAGTCGTCCTCTCTGATTTCTCCCTATCTTTACAATCCTGTTTGTTTATTCTGGCTGAGTAGTTAG 972 0.429 MASSDVNWDRLDKTKFFVVGAGLFTGVTVALYPVSVVKTRLQVASKDTPERNALSVVKGLLKTDGIRGLYKGFLTVMTGTIPTRIIFLTALETTKVASLRMLEPFRLSDTTQTAISNGVAGMTSSLLAQAMFVPIDVVSQKLMVQGYSGHTQYRGGLDVARKVLRSDGIRGLYRGFGLSVMTYVPSSAVWWASYGSSKHYLWRILGDNSGEEGTPSLQKIMLVQATGGIIAGATASSITTPLDTIKTRLQVTGLEKKISVKQVVKDLILEDGWKGLYRGLGPRFFSMSAWGTSMILAYEYLSKSSSLISPYLYNPVCLFWLSS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00725 323 Pfam Mitochondrial carrier protein 113 202 IPR018108 -
Vimu8g00725 323 Pfam Mitochondrial carrier protein 24 96 IPR018108 -
Vimu8g00725 323 Pfam Mitochondrial carrier protein 223 303 IPR018108 -
Vimu8g00725 323 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 3 305 - -
Vimu8g00725 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 219 304 IPR018108 -
Vimu8g00725 323 Gene3D Mitochondrial carrier domain 13 307 IPR023395 -
Vimu8g00725 323 SUPERFAMILY Mitochondrial carrier 9 301 IPR023395 -
Vimu8g00725 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 14 97 IPR018108 -
Vimu8g00725 323 PRINTS Mitochondrial carrier protein signature 173 191 IPR002067 GO:0055085
Vimu8g00725 323 PRINTS Mitochondrial carrier protein signature 228 250 IPR002067 GO:0055085
Vimu8g00725 323 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085
Vimu8g00725 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 112 200 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00725 Vimu-Chr8 14127401 14130903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00725 6 303 Chloroplast and Mitochondria Gene Families AT5G15640 71.096 1.05e-154 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00725 K15121 - gmx:100819519 505.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g00725 8 14127401 14130903 Vimu6g01038 6 11080242 11082452 PCT