Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00722 ATGACTTATGGCTATTGCGTTTTCTATCAGGCAACTGTAACAGTCCACAATTTCCAAATGTTTCGGCACATCATGAATCCTGGATGGACCTTGGGATGGACATGGGCCAAGAGAGAAGTGATTTGGACCATGGTAGGAGCTCAAGCCACAGAACAAGGAGATTGTTCTAAGTTCAAAGGCAACATACCTCATTGCTGCAAGAAAACTCCCACAGTTGTAGACCTACTTCCTGGTGTTCCTTACAACCAGCAATTCACAAACTGCTGCAAGGGTGGAGTGGTGGCTGCATGGGGCCAAGATCCTTCACAAGCTATCTCATCCTTCCAAGTGAGTGTAGGCCAAGCTGGTACAACAAACAAGACAGTGAAACTTCCCAAGAATTTCACTCTCTTGGCTCCTGGACCAGGCTATTCCTGTGGCCCTGCCAAGATTGTTCCTTCCACCACTTTCCTTACCGCTGACAAGCGCCGCAAGACTCAAGCACTAATGACATGGAATGTTACCTGCACATACTCACAGTTCCTGGCAAGAAAGAATCCAAGTTGTTGTGTATCTTTGTCTTCCTTCTATAATGAAACTATCACCCCTTGTCCCTCTTGTGCCTGTGGCTGCCACAACAAGAAGAATTGTGTCAAGCGTGACTCCAAAATTCTCAGCATGGTGGGTCTCCACACTCCCAAGAAAGACAATGAACCATTGTTGCGGTGCACTCATCACATGTGTCCAATCAGGGTTCACTGGCATGTCAAGGTTAACTATAAGGACTATTGGAGAGTCAAGATTGCCATTACAAACTTCAATTACAGGATGAATCACTCTCTCTGGTCTCTTGCTGTTCAGCATCCAAATCTTAATAATCTCACCCAAGTTTTCAGTTTTAATTACAAGCCTCTTCTTCCCTATGGTTCAATAAATGACACTGGCATGTTCTATGGCATGAAATACTTCAATGATCTTCTAATGGAAGCTGGACCAACTGGGAATGTTCAATCAGAGTTGCTTCTTCAGAAGGACAAGGATACATTCACATTCAAGCAGGGGTGGGCTTTTCCTCGCAAGATCTACTTTAATGGCGATGAATGCATGATGCCTCCACCTGACACCTACCCATTTCTACCTAACTCAGCACCGCCAAGCCTAATTACCTTCCTACCATCTATTTTCTTGCTGCTTTTCTTTTTGGCAGTTTGGTGA 1194 0.4481 MTYGYCVFYQATVTVHNFQMFRHIMNPGWTLGWTWAKREVIWTMVGAQATEQGDCSKFKGNIPHCCKKTPTVVDLLPGVPYNQQFTNCCKGGVVAAWGQDPSQAISSFQVSVGQAGTTNKTVKLPKNFTLLAPGPGYSCGPAKIVPSTTFLTADKRRKTQALMTWNVTCTYSQFLARKNPSCCVSLSSFYNETITPCPSCACGCHNKKNCVKRDSKILSMVGLHTPKKDNEPLLRCTHHMCPIRVHWHVKVNYKDYWRVKIAITNFNYRMNHSLWSLAVQHPNLNNLTQVFSFNYKPLLPYGSINDTGMFYGMKYFNDLLMEAGPTGNVQSELLLQKDKDTFTFKQGWAFPRKIYFNGDECMMPPPDTYPFLPNSAPPSLITFLPSIFLLLFFLAVW 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00722 397 PIRSF COBRA 5 397 IPR006918 GO:0010215|GO:0016020
Vimu8g00722 397 PANTHER PROTEIN COBRA 9 387 IPR006918 GO:0010215|GO:0016020
Vimu8g00722 397 Pfam COBRA-like protein 9 172 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00722 Vimu-Chr8 14100108 14101609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00722 9 396 COBRA Gene Family AT3G29810 68.286 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00722 - - gmx:100798678 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g00722 8 14100108 14101609 Vimu6g01041 6 11101253 11103511 PCT
Vimu6g01042 6 11104188 11106500 Vimu8g00722 8 14100108 14101609 PCT