Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00709 ATGGGGAGGGGAAGAGTGGAACTCAAAAGGATAGAGAACAAGATAAACAGGCAGGTAACGTTTGCAAAGAGGAGAAATGGCCTTCTCAAGAAAGCCTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCCCTTATCATCTTTTCCACCCGTGGCAAGCTTTATGAATTTTGCAGCAGTTCAAGCATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTGCAGTTGAAGTCAGCAAACCTGCCAAAGAGCTTGAGAGCAGCTATCGTGAGTACTTGAAGCTGAAAGGAAGATTTGAATCTCTTCAGAGGACCCAGAGAAACCTCCTAGGTGAAGACTTGGGCCCATTAAATACCAAAGAACTTGAGCAGCTTGAGAGGCAGCTAGATTCATCTCTCAAGCAAGTGAGGTCGACAAAGACTCAATTCATGCTGGACCAGTTAGCTGATCTTCAAAATAAGGAGCAGATGTTGGTAGAAGCAAACAGAGCTTTGACCATGAAGCTGGATGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGGCGATCAAAGTATGGCTTATGGTACTCAGAATGCTCATTCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCTACATTGCAGATAGGTTCTGACTACAGGTACAACCCTGAAGCCTCAGATCAGCTAACTGCCACAACTCAAGCTCAACAAGTTCAACAAGTGAACGGTTTCATTCCTGGATGGATGCTTTGA 753 0.4475 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSSSSMLKTLERYQKCSYGAVEVSKPAKELESSYREYLKLKGRFESLQRTQRNLLGEDLGPLNTKELEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEQMLVEANRALTMKLDEINSRNQYRQTWEAGDQSMAYGTQNAHSQGFFQPLECNPTLQIGSDYRYNPEASDQLTATTQAQQVQQVNGFIPGWML 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00709 250 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Vimu8g00709 250 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 185 - -
Vimu8g00709 250 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vimu8g00709 250 Coils Coil 124 144 - -
Vimu8g00709 250 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vimu8g00709 250 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vimu8g00709 250 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vimu8g00709 250 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu8g00709 250 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Vimu8g00709 250 FunFam MADS-box transcription factor 1 13 87 - -
Vimu8g00709 250 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vimu8g00709 250 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vimu8g00709 250 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu8g00709 250 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vimu8g00709 250 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00709 Vimu-Chr8 13925600 13930107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00709 1 250 MADS-box Gene Family AT5G15800 75.285 2.11e-127 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vimu8g00709 K-box 1.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00709 K09264 - gmx:100785322 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g00709 8 13925600 13930107 Vimu6g01051 6 11195519 11201634 PCT