Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00694 ATGGTTCGCCAAACTGATTTAGTTATCATCGGTGTTTCTACTGGTTTGGCACTTGGAATTCTGATATCTTGCCTCATATTTTTCGGCATAAGGTGGTGCAAGAAACGTTCTGCTCATCTCAGACTATCTGCAAATGAGTCTAGTGTCACAACTCTTCCAATACGAACAAATGGGTTGGGAACAAGTACCGACTTTAGTGCATCACTCAATAGTTCCATAGCCACATCAAGGTCAGAAAGTATCAAGAAAAGCTCCCATTTCAGTTGGTGGAGTCCTCAAAACAAAGACCGGTTTGCTTCGGCATCAGGCATTCTAAAGTATTCATACAAAGAAATTCAAAAGTCCACACAAAATTTCACAACAACCTTGGGACAAGGATCATTTGGGACAGTTTATAAAGCGACAATGCCTACAGGGGAGGTTGTAGCAGTGAAGGTGCTTGCACCCAATTCTAAACAAGGGGAGAAAGAATTCCATACAGAGGTATTTCTGCTAGGAAGACTGCATCACCGGAATCTTGTGAATTTGGTTGGATATTGTGTAGATAAAGGGCAACGCATACTGGTTTATCAGTATATGAGTAATGGAAGTTTAGCAAATCTTTTATATGGTGAAGAAAAGGGATTGAGTTGGGATGAAAGGCTGCAAATTGTTCTTGATATTTCACATGGAATAGAATACCTTCATGAAGGAGCTATTCCACCTGTCATACATCGCGATTTAAAGTCTGCCAACATATTGCTAGATCACTCAATGAGAGCTAAGGTTGCTGATTTTGGACTCTCAAAAGAAGAGATCTTTGATGGCAGGAATTCTGGTCTGAAAGGTACATATGGCTACATGGATCCTGCATACATTTCCACAAGCAAGTTAACAACTCAGAGTGACATATACAGTTTTGGTATCATAGTTTTTGAGCTCATCACTGCCATCCACCCTCATCAAAATTTGATGGAGTATGTCAACCTTGCTGCAATGGATCATGATGGTATAGATGAGATACTTGACAAGAAACTAGTGGGAAAATGCAATCTTGAAGAAGTGAGGCAACTTGCTAAGATTGGACATAAATGCCTGCAGAAATCACCTAAGAAACGGCCCTCCATAGGTGAGGTTTCTCAGTTCATATCAAGAATAAAGCAACGTCGTCAGCGCCGTCTGACAGAAGATAACTTGTCATTTGCAAGCAACAACTTTTCTCGAGCTGTGAGTCGATTAGAAGATCGACAGGTTGAACTTAGCAGGATGTCAACCATTAGCCTAACAGAAACTGTATGA 1278 0.4069 MVRQTDLVIIGVSTGLALGILISCLIFFGIRWCKKRSAHLRLSANESSVTTLPIRTNGLGTSTDFSASLNSSIATSRSESIKKSSHFSWWSPQNKDRFASASGILKYSYKEIQKSTQNFTTTLGQGSFGTVYKATMPTGEVVAVKVLAPNSKQGEKEFHTEVFLLGRLHHRNLVNLVGYCVDKGQRILVYQYMSNGSLANLLYGEEKGLSWDERLQIVLDISHGIEYLHEGAIPPVIHRDLKSANILLDHSMRAKVADFGLSKEEIFDGRNSGLKGTYGYMDPAYISTSKLTTQSDIYSFGIIVFELITAIHPHQNLMEYVNLAAMDHDGIDEILDKKLVGKCNLEEVRQLAKIGHKCLQKSPKKRPSIGEVSQFISRIKQRRQRRLTEDNLSFASNNFSRAVSRLEDRQVELSRMSTISLTETV 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00694 425 Gene3D Phosphorylase Kinase; domain 1 80 192 - -
Vimu8g00694 425 Pfam Protein kinase domain 121 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00694 425 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 91 192 - -
Vimu8g00694 425 SMART serkin_6 117 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00694 425 Gene3D Transferase(Phosphotransferase) domain 1 193 402 - -
Vimu8g00694 425 CDD STKc_IRAK 123 379 - -
Vimu8g00694 425 ProSitePatterns Protein kinases ATP-binding region signature. 123 145 IPR017441 GO:0005524
Vimu8g00694 425 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 8 385 - -
Vimu8g00694 425 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Vimu8g00694 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Vimu8g00694 425 SUPERFAMILY Protein kinase-like (PK-like) 104 389 IPR011009 -
Vimu8g00694 425 FunFam Calcium/calmodulin-regulated receptor-like kinase 2 193 402 - -
Vimu8g00694 425 ProSiteProfiles Protein kinase domain profile. 117 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00694 Vimu-Chr8 13736578 13739816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00694 103 376 Receptor kinase-like Gene Family AT3G19300 41.696 8.01e-71 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Vimu8g00694 Pkinase 6.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00694 - - gmx:100819995 774.622