Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00675 ATGTCTAGTCATGATCACCATCACCAACATCTTTCTTCCAATCCCTCTCCGCCGCTCTCCACTCACTCCGATTCTGATTCCGATTCCGACTCAGTGAGTTGCTTCGTCACCGATCTCTTCGATACTCGGTCGCGCCTCTGTTCCTGCGATGACACTGATATTAACCCTTTCTCCGGCGCCGTCTGCGACGTCCATCGCTCCGAACACGTGCTAGGGTTAGGGTTAGGGTTTGGCGTTGACATTGATTCCCAAACGCGGGATAACGATGATAATAATGGCGATAGAGTTTTCAATTTCGCGTTGGGAGATGGTTCGGGAGGGCTTAGGGTTGTAGCGTTCGGGTCGGATTCGGATGATTCGAGTGGCGGGGAGGGTGGGGTTCGTGATGAGGGTGGTGGGTTTGACGATTTCGATGTTCGGTTTTGTTGGGATAGTCTCTGTTTGGATGATCAGAGGACACTGAATGATGGTTTTGAATGGGAGGAAGTTGAGCAGAGGGTGAATGATAGGGAGGATTCGGGTTTGGTGGTTGATGAGGTTGAAGTTGAAGACGATGGAGATGGAGATGGTGATTCGGTGGCGTTTACTAATGCTGACGAGGAAGAGGAAGAGGAGGAGGAGGATGGAGGTGAAGAGGCGCTGAGGTACCTTGAGTGGGAGATTCTCTTAGCGGTTAACAATTCGGAGAGGAATGTTAACAATGGTGATGGTTTGGAGCATGAGGGCGTAGCTGGTGCTGCTGATTTGCTGACAATTCGAGATGGTTATGTGTATGCGGCAGAGTATGATGTTTTATTCGGGCAGTTTCTTGAGAATGAGAGTGCCTTGAAGGGAAGTCCTCCCGCCGCGAAGAGTGTTGTGGAGAGTCTTCCATTGGTGGAGTTGTCAAAGGAGGAGCTGTTGCAGGGGAAGAACTTGGCGTGCGCCATTTGCAAGGATGAGATTTTGTTGGAGGAGAAGGTCAGGAGGTTGCCTTGCTCCCACTGTTACCATGGCGATTGCATTTTGCCATGGTTGGAAATTCGCAACACATGCCCAGTTTGTCGGTTTGAGCTGCCCACAGATGATCCGGACTATGAACAGAGGAAGGTTCACAGGGCTGCTCATGATCTGTTGGAGCTTGCAACGGCAGGGATGCAATTTTGA 1146 0.507 MSSHDHHHQHLSSNPSPPLSTHSDSDSDSDSVSCFVTDLFDTRSRLCSCDDTDINPFSGAVCDVHRSEHVLGLGLGFGVDIDSQTRDNDDNNGDRVFNFALGDGSGGLRVVAFGSDSDDSSGGEGGVRDEGGGFDDFDVRFCWDSLCLDDQRTLNDGFEWEEVEQRVNDREDSGLVVDEVEVEDDGDGDGDSVAFTNADEEEEEEEEDGGEEALRYLEWEILLAVNNSERNVNNGDGLEHEGVAGAADLLTIRDGYVYAAEYDVLFGQFLENESALKGSPPAAKSVVESLPLVELSKEELLQGKNLACAICKDEILLEEKVRRLPCSHCYHGDCILPWLEIRNTCPVCRFELPTDDPDYEQRKVHRAAHDLLELATAGMQF 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00675 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 190 353 - -
Vimu8g00675 381 Pfam Ring finger domain 307 349 IPR001841 -
Vimu8g00675 381 MobiDBLite consensus disorder prediction 1 27 - -
Vimu8g00675 381 FunFam E3 ubiquitin-protein ligase RING1-like 268 355 - -
Vimu8g00675 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 355 IPR013083 -
Vimu8g00675 381 MobiDBLite consensus disorder prediction 181 211 - -
Vimu8g00675 381 ProSiteProfiles Zinc finger RING-type profile. 308 349 IPR001841 -
Vimu8g00675 381 SMART ring_2 308 348 IPR001841 -
Vimu8g00675 381 SUPERFAMILY RING/U-box 295 356 - -
Vimu8g00675 381 MobiDBLite consensus disorder prediction 12 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00675 Vimu-Chr8 13522982 13524127 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00675 219 363 C3H Transcription Factor Family AT3G02340 49.367 1.28e-44 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00675 - - vra:106778727 679.093