Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00671 ATGATTAGATTTTGTTTTAACCATGTTGAAGTTGTCAATCTCAGATGGTCTCAGATTGCTGCACGTCTTCCTGGACGCACAGACAATGAAATAAAGAATTTCTGGAACTCCACACTGAAGAAAAGGTTGAAAATGAGCAGCAGCAGCAATAACAACACTTCATCGCCAAACAACAGTGACTCATCAGACCCTAGAGATGTCATGGGGGGGATAGTGCCAATGAATGATCAGCATGACCTCATGACCATGTGCATGGACTCCTCCTCATCAACATCATCATCATCCATGCAATCCATGCAAGCCAACATGGCACTAACTGACCAATTTGACCCCTTTCCTTTGTTGTCCAACCGCTATGACATGACCACCGGTGCAGCCGGTTTCCTTGACAACATGGCTGCATGCTTAACACAAGTTGGTATGGGAGATCATGATGATGGGGTTGTTCATGGAGGTTATGGGGCATTGGAACCTAATAAAATGGGGTTAGAAAGCGACTTTTCCCTTCCTCCACTAGAAAGTAGAAGCATTGAGGACAATTCTAGTAACCCAATTGATGTGAAAAGCCATAACAACAACCACTTGAAGAACAGTTGCTTCAGTAACACTGATCATCAGCATCACCATCATCATCATCATAATTTTCAAACCTCCAACAACGTAGTTGTAGAGGATTTGTTTGGTTTTGGAAATCATGGGCAAGGGGAAAACTTTAGAATGGGAGAATGGGACTTTGAGGGTTTGATGCAAGACATGTCCTATTTCCCTTCCCTTGATTTCCAAGTTTAA 789 0.4284 MIRFCFNHVEVVNLRWSQIAARLPGRTDNEIKNFWNSTLKKRLKMSSSSNNNTSSPNNSDSSDPRDVMGGIVPMNDQHDLMTMCMDSSSSTSSSSMQSMQANMALTDQFDPFPLLSNRYDMTTGAAGFLDNMAACLTQVGMGDHDDGVVHGGYGALEPNKMGLESDFSLPPLESRSIEDNSSNPIDVKSHNNNHLKNSCFSNTDHQHHHHHHHNFQTSNNVVVEDLFGFGNHGQGENFRMGEWDFEGLMQDMSYFPSLDFQV 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00671 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 43 IPR017930 -
Vimu8g00671 262 MobiDBLite consensus disorder prediction 45 71 - -
Vimu8g00671 262 ProSiteProfiles Myb-like domain profile. 15 39 IPR001005 -
Vimu8g00671 262 MobiDBLite consensus disorder prediction 45 64 - -
Vimu8g00671 262 MobiDBLite consensus disorder prediction 174 190 - -
Vimu8g00671 262 PANTHER MYB DOMAIN PROTEIN 55 15 214 - -
Vimu8g00671 262 Pfam Myb-like DNA-binding domain 15 38 IPR001005 -
Vimu8g00671 262 MobiDBLite consensus disorder prediction 164 190 - -
Vimu8g00671 262 CDD SANT 15 39 IPR001005 -
Vimu8g00671 262 Gene3D - 5 67 - -
Vimu8g00671 262 SUPERFAMILY Homeodomain-like 10 47 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00671 Vimu-Chr8 13465032 13465820 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00671 15 262 MYB Transcription Factor Family AT3G08500 35.185 2.05e-23 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu8g00671 Myb_DNA-binding 1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00671 K09422 - gmx:100813660 352.443