Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00664 ATGTTGAAGGAAGGCACCAACAACGTTGGTGGCAGCTCCAGCACCTGGTCACGTGTCTGCGACACGTGCCGGTCAGCTCCATGCATAGTCTACTGCCATGCAGACTCAGCATACCTGTGTTCATCCTGTGATGCTCGTGTCCATGCAGCCAACCGTGTGGCCTCAAGGCACGAGCGTGTGTGGGTGTGTGAAGCGTGTGAACGTGCTCCCGCAGCGTTTCTTTGCAAAGCTGACGCAGCTTCTCTTTGTACTTCTTGTGATGCTGACATTCACTCAGCAAACCCTCTTGCCAGCCGCCACCACCGTGTCCCCATTCTCCCCATCTTGGATCACGAACCGGAACACGGTTTCGTGAACGAGGTGGAAGAGGAAGAGGAAGAAGTTTTCGATGAGTACGATGATGAGGTTGAAGCTGCTTCGTGGTTGTTGCCACATCCTGTGAAGGGTAACCAAGAGCAGGAGAATGGTCTTTTGTACGGTGATGAGTATTTGGACAACCTTGTGGATTGTAACTCGTGTGGTGACCATAACCAGTTTAGCAACGTTTTTCAGCAGCAGCAGAACTACAACACTGTCCCTCAGAACTATGCACTGGTTCCAGTTCAGGTGCTGCAACAATTGCAGCACTTTCAACCGGGTTTGGAATTTGACTCGTCAAAAGCTGGGTCTATTAGCCAAAGCGTATCAGTTTCATCAATGGAAGTTGGTGTAGTCCCAGAATCAACAATAAGTGACATATCAGTGTCCTATTCAAAGTCACCAATAGGGACAAGTGACCTATTTCCTCCCCTTCCCATGCCTTCACATCTTACACCAATGGACAGAGAGGCCAGAGTCCTAAGATATAGGGAGAAAAAGAAGACAAGAAAGTTTGAAAAGAAGATAAGGTATGCCTCAAGGAAGGCTTATGCAGAAACCAGACCACGCATCAAGGGTAGATTTGCAAAGAGAACTGATGTGGAAGCTGAAGTGGATCAAATGCTCTCCACAACACTATTCAATGAAGTCGGAGGAACCATTTTCCCATCTTTCTAG 1035 0.4831 MLKEGTNNVGGSSSTWSRVCDTCRSAPCIVYCHADSAYLCSSCDARVHAANRVASRHERVWVCEACERAPAAFLCKADAASLCTSCDADIHSANPLASRHHRVPILPILDHEPEHGFVNEVEEEEEEVFDEYDDEVEAASWLLPHPVKGNQEQENGLLYGDEYLDNLVDCNSCGDHNQFSNVFQQQQNYNTVPQNYALVPVQVLQQLQHFQPGLEFDSSKAGSISQSVSVSSMEVGVVPESTISDISVSYSKSPIGTSDLFPPLPMPSHLTPMDREARVLRYREKKKTRKFEKKIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMLSTTLFNEVGGTIFPSF 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00664 344 SMART bboxneu5 15 62 IPR000315 GO:0008270
Vimu8g00664 344 SMART bboxneu5 63 105 IPR000315 GO:0008270
Vimu8g00664 344 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 20 330 IPR045281 GO:0009909
Vimu8g00664 344 Pfam B-box zinc finger 60 105 IPR000315 GO:0008270
Vimu8g00664 344 CDD Bbox1_BBX-like 19 62 - -
Vimu8g00664 344 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Vimu8g00664 344 Pfam CCT motif 275 317 IPR010402 GO:0005515
Vimu8g00664 344 CDD Bbox1_BBX-like 62 105 - -
Vimu8g00664 344 ProSiteProfiles Zinc finger B-box type profile. 58 105 IPR000315 GO:0008270
Vimu8g00664 344 ProSiteProfiles CCT domain profile. 275 317 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00664 Vimu-Chr8 13381682 13383511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00664 1 344 C2C2-CO-like Transcription Factor Family AT3G02380 55.679 3.00e-123 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vimu8g00664 zf-B_box 4.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00664 - K12135 gmx:100782635 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g00664 8 13381682 13383511 Vimu6g01107 6 11543208 11545689 PCT