Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00663 ATGTCTTCAAATCAGTTCATTGAGGAGGATTTAGAACTGAGTCTTTGTGTCTCTCTTGATGTAGTGCAAGCTTTAATGGGGATAAAAGCTTTTCTTGTGGATCCCCATGGTATTCTAGATAATTGGGATGCGGATGCAGTTGATCCATGCAGCTGGAATATGGTCACGTGTTCCCCAGAGAATCTTGTTGTTAGCCTGGGCATTCCCAGCCAAAATTTATCTGGTATTCTGTCTCCAAGCATAGGAAACCTGACATATCTTCAGACTGTGGTGCTACAAAATAACAACTTAACTGGTTCAATTCCTTCAGAGATAGGAAAACTTTCCAAGCTTCAAACTCTTGATCTCTCTGACAACTTCTTCAATGGGGAGATTCCTCCCTCTCTGGGTCACCTGAGAAGCCTCCAGTACTTGAGGCTCAATAATAACAGTTTTGATGGAGAATGCCCAGTGTCACTAGCTAACATGGCGCAGCTTGCTTTTCTTGACTTGTCCTACAATAATCTGAGTGGCCCTATACCTAGAATTATGGCCAAATCCTTCAGTATTGTAGGAAACCCCTTAGTCTGCACCACAGGAAAAGAAAAAAATTGCCATGGGATGACACTTATGCCCATGTCGATGAACTTGAACAGTTCTGAGAATGCTTTACCATCTGGTAGAACAAAGGCTCACAAAATGGCCATTGCCTTTGGTCTGAGTCTTGGATTCCTCTGCTTGGTAGCTTTTGGTCTTGGACTTATTCTATTGAGGAGGTACAACCGTAAACAAAAGTCATTCTTTGATGTTAAAGACCATCGTCATGAAGAAGTCTACCTTGGAAACTTGAAGAGGTTCCAGCTACGTGAACTCCAGATTGCTACTAACAACTTCAGCAACAAAAACATCCTCGGCAAGGGTGGTTTTGGACATGTCTACAAGGGAATTCTCCCAGATGGCACTCTTGTAGCAGTGAAGAGGCTTAAAGATGGCAGTGCAACTGGAGGAGATATACAATTTCAGACTGAAGTTGAAATGATAAGCTTGGCAGTGCACCGAAACCTCCTCAAACTGTATGGATTTTGCATGACACCAACAGAAAGGCTTTTGGTTTATCCTTACATGTCCAATGGCAGTGTTGCTTCTAGGCTCAAGGGTAAGCCAGTGTTGGATTGGGGCACAAGGAAGCAGATTGCCATAGGAGCAGCAAGGGGACTGCTATACCTTCATGAGCAGTGTGATCCAAAGATAATCCACAGAGATGTGAAGGCTGCAAATATATTGCTTGATGACTATTGTGAGGCAGTGGTAGGGGATTTTGGGTTGGCTAAGCTTTTAGATCATCAAGATTCACATGTCACAACTGCAGTGAGGGGAACAGTGGGGCATATAGCACCAGAGTATCTTTCCACAGGGCAATCTTCTGAGAAGACCGACGTCTTTGGATTCGGCATTCTGCTTCTTGAGTTAATCACTGGCCAGAGGGCACTGGAATTTGGAAAAGCAGCCAACCAAAAAGGAGCCATGCTTGATTGGGTAAGGAAAATCCATCAAGAGAAGAAGCTTGAGTTGCTTGTGGACAAGGATCTGATGAGCAACTATGACAGGATTGAGCTTGAGGAAATTGTTCAAGTGGCACTCTTGTGCACACAATATCTTCCTGGTCACAGGCCTAGAATGTCAGAAGTTGTACGCATGCTTGAAGGTGATGGTCTTGCAGAGAAATGGGAAGCTTCTCAAAGTGCTGACAACAGCAAATGCAGCAAACCACATGAACTCTCTTCATCAGATAGGTATTCTGACCTCACTGATGACTCTTCTTTGTTGGTCCAAGCAATGGAACTCTCAGGCCCCAGAGGAGGAAACATGAAGACGATTCTATCTTCCGAAACGATGAACATTCCCGACGGCGTGAGCATCAAAGTTCACGCGAAAGTGATCGAGGTGGAAGGACCTCGTGGAAAATTGGTGCGAGATTTTAAACATCTCAACCTCGATTTTCAGCTCATCACCGACGAGAATGGCAAGAAGAAGCTGAAGATCGATGCCTGGTTCGGATCTCGCAAAACCTCCGCCGCCATTCGCACCGCCCTCAGCCACGTTGACAACCTCATCACCGGTGTCACCAAGGGCTACCGCTACAAGATGAGGTTTGTCTACGCCCACTTTCCCATTAACGCCAGCATCGCCAACGACAACAAATCCATTGAAATCCGAAACTTCCTTGGCGAGAAGAAGGTATATCACTGCTGTGCGATTTTGGTTTACTCTTCAGCTTATGGTTTAATATTTGATGTAGAAATTTGCAATCTTAATCTTCTACGCAAGCAGGTGAGGAAAGTGGATATGCTTGAGGGTGTGTCTGTTGTTCGATCAGAAAAGGTGAAGGACGAGTTGGTTTTGGATGGAAATGACATAGAGCTTGTTTCCAGGTCTTGTGCTCTCATCAACCAGAAATGTCATGTTAAAAACAAGGATATTCGGAAGTTCCTTGATGGTATTTACGTCAGTGAGAAGGGAACAATACTAGTAGAGGAGTAG 2520 0.4456 MSSNQFIEEDLELSLCVSLDVVQALMGIKAFLVDPHGILDNWDADAVDPCSWNMVTCSPENLVVSLGIPSQNLSGILSPSIGNLTYLQTVVLQNNNLTGSIPSEIGKLSKLQTLDLSDNFFNGEIPPSLGHLRSLQYLRLNNNSFDGECPVSLANMAQLAFLDLSYNNLSGPIPRIMAKSFSIVGNPLVCTTGKEKNCHGMTLMPMSMNLNSSENALPSGRTKAHKMAIAFGLSLGFLCLVAFGLGLILLRRYNRKQKSFFDVKDHRHEEVYLGNLKRFQLRELQIATNNFSNKNILGKGGFGHVYKGILPDGTLVAVKRLKDGSATGGDIQFQTEVEMISLAVHRNLLKLYGFCMTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKQIAIGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVRKIHQEKKLELLVDKDLMSNYDRIELEEIVQVALLCTQYLPGHRPRMSEVVRMLEGDGLAEKWEASQSADNSKCSKPHELSSSDRYSDLTDDSSLLVQAMELSGPRGGNMKTILSSETMNIPDGVSIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLITDENGKKKLKIDAWFGSRKTSAAIRTALSHVDNLITGVTKGYRYKMRFVYAHFPINASIANDNKSIEIRNFLGEKKVYHCCAILVYSSAYGLIFDVEICNLNLLRKQVRKVDMLEGVSVVRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLDGIYVSEKGTILVEE 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00663 839 ProSitePatterns Protein kinases ATP-binding region signature. 297 319 IPR017441 GO:0005524
Vimu8g00663 839 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 22 571 - -
Vimu8g00663 839 Gene3D - 616 704 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vimu8g00663 839 Gene3D Ribonuclease Inhibitor 21 200 IPR032675 -
Vimu8g00663 839 SUPERFAMILY Ribosomal protein L6 616 704 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vimu8g00663 839 FunFam Putative LRR receptor-like serine/threonine-protein kinase 19 200 - -
Vimu8g00663 839 FunFam Somatic embryogenesis receptor kinase 1 260 367 - -
Vimu8g00663 839 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672|GO:0006468
Vimu8g00663 839 SUPERFAMILY Protein kinase-like (PK-like) 267 561 IPR011009 -
Vimu8g00663 839 Pfam Leucine Rich Repeat 110 132 IPR001611 GO:0005515
Vimu8g00663 839 FunFam Somatic embryogenesis receptor-like kinase 1 368 580 - -
Vimu8g00663 839 Pfam Leucine rich repeat N-terminal domain 22 58 IPR013210 -
Vimu8g00663 839 ProSiteProfiles Protein kinase domain profile. 291 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00663 839 SUPERFAMILY L domain-like 19 293 - -
Vimu8g00663 839 Gene3D Phosphorylase Kinase; domain 1 260 367 - -
Vimu8g00663 839 SMART serkin_6 291 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00663 839 MobiDBLite consensus disorder prediction 571 593 - -
Vimu8g00663 839 ProSitePatterns Ribosomal protein L6 signature 2. 811 832 IPR002359 GO:0003735|GO:0005840|GO:0006412
Vimu8g00663 839 Gene3D - 705 839 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vimu8g00663 839 FunFam 60S ribosomal protein L9 616 704 - -
Vimu8g00663 839 Pfam Ribosomal protein L6 627 704 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vimu8g00663 839 SUPERFAMILY Ribosomal protein L6 768 832 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vimu8g00663 839 Gene3D Transferase(Phosphotransferase) domain 1 368 580 - -
Vimu8g00663 839 FunFam 60S ribosomal protein L9 748 839 - -
Vimu8g00663 839 Pfam Protein kinase domain 292 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00663 839 SUPERFAMILY Ribosomal protein L6 705 742 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00663 Vimu-Chr8 13363759 13375532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00663 22 612 Receptor kinase-like Gene Family AT5G16000 78.057 0.0 951
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vimu8g00663 Pkinase 5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00663 - - gmx:100806650 1079.7