Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00641 ATGGAAGCAGAAGAACACTTTCAACTTCCTCGTCTATCTCACGAAGTTGCAAATTCTCCGGTTCAAGGAATGGAAAGCGTGGTGGCAACGGTTAGCGGTTACCACGGCTCCGAGCGGTTCGATCTCATCAAGCTGATTTCATATGCCGGCGCCAATTACGTTGGAACAATGTCAAAATCGATAACGCATTTGGTGTGCTGGAAATTTGAAGGAAAGAAATACGATATTGCGTTGAAGTTTAGAATACATGTAGTGAACCACCAATGGATTGAGGACTGCATAAAGGAAGGGAGGCGTGTTCCAGAAGATTCTTATACCTTGCAGAGCATCCAATGTCATCATCATGCTCTTGGAATTAGAATGAGCTTTAAAAAAGCACGAGCTGATCAATTTGATATGGCAGTTTTTGCTTTGGATTGTGTTATGGCTGGACATGAAGTAGGGCGATTGTTACTGGAAGTTCCCCTCACTGTTCGGGCCAGTAGGTTGACAAAGGAAAAAATCGTCAGTGACAAGTTACATGATACTGGGACTGAAAGGCAAAAACCTAACTTCGGTTCTGGAATTTCAATAACTTATGTTTTGGAAGATTCTTGTTTAATGAAAAAGCATGATGAATCAACTTCATATTCGTCTAGACTGTCAAGGAAAGGAAAAAGAAACATTTGTAACGGTAAGGGAGTCATTACTCGAGCTGGACCTTCTCGTAAAGGAAGAAGACTTACGAGAAATCTTGTTGATGATGTGGTGTTGGCTCCTTCAATTTTGGATTTAATAAGCCCAGATTACCTTTTTAAAGCGGATAGACTACAAACAGACGCTGAAGCGACATCTAGCCTTTCTGGTGGTGTCAATAATAACACTATTCTACAAAATAGTGAAGGACCTAATGCTGGATTAAGTACTGAAAGTAGAATTATCGATGGTGGTTCAGATGATATTGAACAGATCAAAGATTCAGTTCATATATCTACTCTTAGAAATTCAACTTTGTTTGTAGAAGATGCCCTACGTGTGCCACAAACATCAATAGATTTATGCTCTAGTGATGATGAAAAATTCACCAATGGTGATCAGGTTGATAACGGTGCTGGCTTACCTACTTCAACAGAGATGTCATGTGTTATATGTTTCACAGATTTCAGCACAACACGGGGGATTCTGCCATGTGGACATCGATTTTGTTTTCCATGCATCCAGAGTTGGGTTGACCATAGGACTTCAATGAGAAAAAAATCAACTTGCCCTCTGTGCAAGGCAAGTTTTGTGATGATTAAGAAAGTCGAGCATGCAGCCACTACGGATCAAAAAGTATACTCCCAGACAATCCCATGTAACAATTCAGCCTCAGAAATTTTTATCGCCATGGATCAAGAATTACCGCATACTACCTTTGAGTCTACACAAACAGGAGCTTGTGTAATTTGCCGTGGTAGGGAACCAGAGGATCTCCTTGAGAATTGTGATATTTGCCAAATTCAAAAAATTCATTCTTATTGCATGGACCCTCCTCTACGGCCATGGACATGCAATCATTGTAAGGAACTTCGGATGCTTTATCGCACTAATCACTATTAG 1578 0.4049 MEAEEHFQLPRLSHEVANSPVQGMESVVATVSGYHGSERFDLIKLISYAGANYVGTMSKSITHLVCWKFEGKKYDIALKFRIHVVNHQWIEDCIKEGRRVPEDSYTLQSIQCHHHALGIRMSFKKARADQFDMAVFALDCVMAGHEVGRLLLEVPLTVRASRLTKEKIVSDKLHDTGTERQKPNFGSGISITYVLEDSCLMKKHDESTSYSSRLSRKGKRNICNGKGVITRAGPSRKGRRLTRNLVDDVVLAPSILDLISPDYLFKADRLQTDAEATSSLSGGVNNNTILQNSEGPNAGLSTESRIIDGGSDDIEQIKDSVHISTLRNSTLFVEDALRVPQTSIDLCSSDDEKFTNGDQVDNGAGLPTSTEMSCVICFTDFSTTRGILPCGHRFCFPCIQSWVDHRTSMRKKSTCPLCKASFVMIKKVEHAATTDQKVYSQTIPCNNSASEIFIAMDQELPHTTFESTQTGACVICRGREPEDLLENCDICQIQKIHSYCMDPPLRPWTCNHCKELRMLYRTNHY 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00641 525 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 459 524 IPR013083 -
Vimu8g00641 525 PANTHER F5A8.9 PROTEIN 186 522 - -
Vimu8g00641 525 SMART ring_2 374 418 IPR001841 -
Vimu8g00641 525 Pfam Zinc finger, C3HC4 type (RING finger) 374 418 IPR018957 GO:0046872
Vimu8g00641 525 MobiDBLite consensus disorder prediction 276 304 - -
Vimu8g00641 525 SUPERFAMILY FYVE/PHD zinc finger 462 516 IPR011011 -
Vimu8g00641 525 ProSiteProfiles BRCT domain profile. 16 107 IPR001357 -
Vimu8g00641 525 SUPERFAMILY RING/U-box 373 426 - -
Vimu8g00641 525 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 368 439 IPR013083 -
Vimu8g00641 525 ProSiteProfiles Zinc finger RING-type profile. 374 419 IPR001841 -
Vimu8g00641 525 Gene3D BRCT domain 20 111 IPR036420 -
Vimu8g00641 525 ProSitePatterns Zinc finger RING-type signature. 390 399 IPR017907 -
Vimu8g00641 525 Pfam twin BRCT domain 27 89 IPR001357 -
Vimu8g00641 525 MobiDBLite consensus disorder prediction 276 300 - -
Vimu8g00641 525 SUPERFAMILY BRCT domain 18 108 IPR036420 -
Vimu8g00641 525 SMART BRCT_7 21 97 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00641 Vimu-Chr8 13011633 13017159 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00641 61 107 Core DNA Replication Machinery Family AT4G02110 50.000 4.30e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00641 - - gmx:100815034 778.859