Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00609 ATGTTTTTAGGGTCACACATTCTGGCCCAGTTGGTCTCCCTCGGCGAAATCGATGAGGTGAGGGAAGCTCTGGAGAGAAGCGACCCTTCGTGGAGAATTGTGAACAGCACCGACACACATGGCCAGACATTGCTCCACTTGGCGGTCGCGCAGGGAAGAGCTGACCTCGTTCAACTGCTTCTGGAGTTCGAGGCCGATACCGAGGCAACAAACCGTTCTGGGTTGACCCCACTTGAGGCTGCAGCATCGGCCAACACGGAGCGAGCCGAAATGGCCGTGTTTGGGCCGATTCATCACGCGGCCAGAGGAGGACACGTGGAGGTCCTGAGACTGCTCTTGCTCAAAGGCGCCAAAGTGGACTCGCTCACGAAAGACGGCAACACTGCTCTGCACGTTGCAGTTGAGGAGCGTCGAAGAGACTGTGTTAGACTTCTTCTAGCCAACGGTGCCAGAACTGACCTTAAGAACGCAAGAGAAGGTGACACCCCTTTGCACACGGCAGCAGCAGCAGGAGACGAGAGCATGGTGAAGCTCCTGCTGCAAAAGGGCAATGCCAACAAGAACATTCGAAACGCGCAAGGCAAAACCGCCTACGACGTCGCGGTGGAGAACGGCCACGAGCACCTCTTCGACGCCCTGAGTCTGGGCGACAAGCTGTGCACGGCTGCAAAGAAAGGCGAAGTGAGAACCATCCAGAAGCTTCTGGAGAACGGCGCGGACCTTAACGGGAGGGACCAGAACGGTTGGACCGCGCTGCACCGGGCCTCGTTCAAAGGGCGAATCGACGTGGTGAAGGTTCTGGTGGAGAGAGGGGTGGAGGTGGACGCGAAGGACGAAGAAGGGTACACGGCACTGCACTGTGCGGCGGAGGCGGGGCACGCAGACGTGACGGAGTTTTTGGTGAAGAAAGGTGCAGACGTTGAGGCGAGGACTAGGAAGGGCGTGAGCGCGTTGCAGATAACAGAGTCGTTGAACTACGTGGGGATCACGAGGGTTCTTGTTAACGGTGGGGCTAGTAGGGAAAATTCTGATAGAGTCTCTGCGTTTGGTGCAATTGCTTTTGGGAGTAAGATAATGGAAGGTGGGGGTGTTGTTAAGAAGAGGAGGGGTAGTGATAGAGGTAATATCAGAGGGTTGAAAAATGGTGCTGGTTTTGGTCGTTCATTGGCTCTGGCTGTGCTCTGA 1185 0.562 MFLGSHILAQLVSLGEIDEVREALERSDPSWRIVNSTDTHGQTLLHLAVAQGRADLVQLLLEFEADTEATNRSGLTPLEAAASANTERAEMAVFGPIHHAARGGHVEVLRLLLLKGAKVDSLTKDGNTALHVAVEERRRDCVRLLLANGARTDLKNAREGDTPLHTAAAAGDESMVKLLLQKGNANKNIRNAQGKTAYDVAVENGHEHLFDALSLGDKLCTAAKKGEVRTIQKLLENGADLNGRDQNGWTALHRASFKGRIDVVKVLVERGVEVDAKDEEGYTALHCAAEAGHADVTEFLVKKGADVEARTRKGVSALQITESLNYVGITRVLVNGGASRENSDRVSAFGAIAFGSKIMEGGGVVKKRRGSDRGNIRGLKNGAGFGRSLALAVL 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00609 394 Pfam Ankyrin repeats (3 copies) 96 155 IPR002110 GO:0005515
Vimu8g00609 394 Pfam Ankyrin repeats (3 copies) 156 213 IPR002110 GO:0005515
Vimu8g00609 394 Pfam Ankyrin repeats (3 copies) 220 310 IPR002110 GO:0005515
Vimu8g00609 394 PANTHER MYOTROPHIN 96 207 - -
Vimu8g00609 394 ProSiteProfiles Ankyrin repeat region circular profile. 96 120 - -
Vimu8g00609 394 Gene3D - 94 129 IPR036770 -
Vimu8g00609 394 SUPERFAMILY Ankyrin repeat 34 344 IPR036770 -
Vimu8g00609 394 Gene3D - 130 157 IPR036770 -
Vimu8g00609 394 ProSiteProfiles Ankyrin repeat region circular profile. 159 183 - -
Vimu8g00609 394 ProSiteProfiles Ankyrin repeat profile. 96 124 IPR002110 GO:0005515
Vimu8g00609 394 Pfam Ankyrin repeats (many copies) 34 79 IPR002110 GO:0005515
Vimu8g00609 394 ProSiteProfiles Ankyrin repeat profile. 219 246 IPR002110 GO:0005515
Vimu8g00609 394 ProSiteProfiles Ankyrin repeat profile. 40 72 IPR002110 GO:0005515
Vimu8g00609 394 SMART ANK_2a 159 189 IPR002110 GO:0005515
Vimu8g00609 394 SMART ANK_2a 40 69 IPR002110 GO:0005515
Vimu8g00609 394 SMART ANK_2a 313 342 IPR002110 GO:0005515
Vimu8g00609 394 SMART ANK_2a 125 154 IPR002110 GO:0005515
Vimu8g00609 394 SMART ANK_2a 247 276 IPR002110 GO:0005515
Vimu8g00609 394 SMART ANK_2a 92 121 IPR002110 GO:0005515
Vimu8g00609 394 SMART ANK_2a 193 243 IPR002110 GO:0005515
Vimu8g00609 394 SMART ANK_2a 280 309 IPR002110 GO:0005515
Vimu8g00609 394 Gene3D - 217 356 IPR036770 -
Vimu8g00609 394 ProSiteProfiles Ankyrin repeat region circular profile. 125 156 - -
Vimu8g00609 394 PRINTS Ankyrin repeat signature 160 175 IPR002110 GO:0005515
Vimu8g00609 394 PRINTS Ankyrin repeat signature 296 310 IPR002110 GO:0005515
Vimu8g00609 394 Gene3D - 3 93 IPR036770 -
Vimu8g00609 394 ProSiteProfiles Ankyrin repeat profile. 125 157 IPR002110 GO:0005515
Vimu8g00609 394 ProSiteProfiles Ankyrin repeat region circular profile. 247 279 - -
Vimu8g00609 394 ProSiteProfiles Ankyrin repeat region circular profile. 280 312 - -
Vimu8g00609 394 ProSiteProfiles Ankyrin repeat profile. 159 183 IPR002110 GO:0005515
Vimu8g00609 394 ProSiteProfiles Ankyrin repeat region circular profile. 40 72 - -
Vimu8g00609 394 ProSiteProfiles Ankyrin repeat profile. 247 279 IPR002110 GO:0005515
Vimu8g00609 394 ProSiteProfiles Ankyrin repeat profile. 280 312 IPR002110 GO:0005515
Vimu8g00609 394 Gene3D - 158 216 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00609 Vimu-Chr8 12674283 12675592 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00609 213 320 Ion Channels AT4G32500 33.333 1.05e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00609 - - gmx:100782444 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03401 6 30715699 30717584 Vimu8g00609 8 12674283 12675592 PCT