Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00603 ATGGGGAGCAGAAAGGAAGAAGAGAAGAATGAGAAAATTATCAGAGGTCTCATGAAGCTTCCGCCGAATCGAAGATGTATCAACTGCAACAGCTTGGGACCACAATATGTATGTACAAGTTTTTGGACTTTCATTTGCATGACATGCAGTGGAATACATCGTGAGTTTACTCATCGTGTGAAGTCTGTCTCAATGGCAAAGTTCACTTCGCAAGAAGTCGATGCCCTTCAAATTGGGGGTAACCAGCGTGCAAGGGAAATATACTTGAAAAATTGGGACTTCCAAAGGCAGCGGTTGCCAGATAACAGCAATGTTGATAAAATAAGGGAGTTCATAAAGAGTGTATATGTGGATGGAAGATATGCTGCAAGCCCTGGAATTCATGAAGATGAGGTTAGGCGTGCCAGTTCTTATCATTCATATTCTCAAAGTCCTCCATATGATTATCAGTATGAGGATCGGAAGTATGGAAAACAAGCAGCTGCACTCACCAGGAAGCCTGGTTCAGATAAAGCTCGATATGAAGGGAAAATATCTAGTATTATCTACAGTCCTGGCCGCTTCAGTGATCATGCATATGATGACAGATTTGCAAATGAAGGATCTGGTCCAAGAATTTCTGACTTTTCTGTTTTTAGTGGTGGTGAACAATTCAAATCTGATGTGCAGTCTCCCAATTCCTATAAAGATATTAAGATTAGCAGTCCATCCTATCAAAGGCGCTCTGGTTCCAGTTCGAGTGAAGATGTGTGGTACCAAGCAAGAAATGCATCTCTGGAAACTAATGTCAATGCCAAGAGAGATGGAAATGGATTTCGTCCTCCACAGATAACTGCATCAGAACAATCAGGAGACAACCAAATTTCATCCTTGAGATCTTATAATTCTGGCAGTTTAGTTGATTTTTTCTCTGAACCAGTTCAACCTTCAGAACCACTTCAGAATAAAGCATTTGGCATCCCACGACCACCTGGTCCTACAAGATCTGTTAGCATGGACCTCTCCAAGGCACCATTTGAATCGGCAGTGGCGGCATCTCAAGCTCCAACAGTGGATCTGTTTCAATCATCCTTTTCATCTGCAGTTCCATTTTTCAATGATAATCAACTTCCTCAAGCATCCCAACCTGCATCCATTGAATTTTTTGCGGATCTCTCTGAGAAGCCTTCCACTGTAAACTCAAATGAAAAGGCACTGGATTTATCTGTCCCTAAAAATGAAGGATGGGCAACTTTTGATATGCCTCAGAGCACCTCATCCACTGCACAAATGGAAATTCCAGCTACTGTACCCTTAAGTGCTAAATCTTTACAAGAAAGATTTGATCCGTTTTCCACTTCAAATGCAAACACACAATGGCCATCTTTTGAATTTTCAAGTGGCAGTATACATTCTTCACTTACATCTAATTTATGGGATGCTGGTGTGTGGAGTAGTGAAGAACAAGTTTCCGCTATATCAGCAAACACTCAACCATGGAATGCATTTGAAGATTCTGGTGGCCATCATCCTGTGGATGCCCTAAGTCAAGGATTAGAATTGCACAATTTTCCCTCAGCTGATAATCAAATTTTGGGATTAAGAGAGTCTGAGGGGTCCAAAAGTGATGGCGTTAAAGGCATTGTCCCTGTTGATGCATTTGAAAATCATGACATCCCATCGCATGTCAATGATTCAGAATATCCACCATCTATGCTTCCTTCAATGGGAGGCATTGAACCTATTGGAACGAAATGTAAATCAACTAATCCATTTGATTTTCCTCATGAATCTGATGTAGCTCACAACAATATGTTTCTTGATATGAGCTCTTTGCAAGATGCACTGCCAGATGCCCTGTTTCCAACCTCCTTCCATAGTGGTATAGCTGAATCTTGGCTTCCCCAAAACACGGTGACCCCTTTTATTTCCTCTTCTGGAGAAGGTGGTTTGTCATTCATGGCTGTGCAATCACCAGGTTCTCAGATACAGAACATCCAGACACCGGAACCAGTTGCTTCGTTTGGGGGAAATCCTTTTGCATAG 2025 0.4178 MGSRKEEEKNEKIIRGLMKLPPNRRCINCNSLGPQYVCTSFWTFICMTCSGIHREFTHRVKSVSMAKFTSQEVDALQIGGNQRAREIYLKNWDFQRQRLPDNSNVDKIREFIKSVYVDGRYAASPGIHEDEVRRASSYHSYSQSPPYDYQYEDRKYGKQAAALTRKPGSDKARYEGKISSIIYSPGRFSDHAYDDRFANEGSGPRISDFSVFSGGEQFKSDVQSPNSYKDIKISSPSYQRRSGSSSSEDVWYQARNASLETNVNAKRDGNGFRPPQITASEQSGDNQISSLRSYNSGSLVDFFSEPVQPSEPLQNKAFGIPRPPGPTRSVSMDLSKAPFESAVAASQAPTVDLFQSSFSSAVPFFNDNQLPQASQPASIEFFADLSEKPSTVNSNEKALDLSVPKNEGWATFDMPQSTSSTAQMEIPATVPLSAKSLQERFDPFSTSNANTQWPSFEFSSGSIHSSLTSNLWDAGVWSSEEQVSAISANTQPWNAFEDSGGHHPVDALSQGLELHNFPSADNQILGLRESEGSKSDGVKGIVPVDAFENHDIPSHVNDSEYPPSMLPSMGGIEPIGTKCKSTNPFDFPHESDVAHNNMFLDMSSLQDALPDALFPTSFHSGIAESWLPQNTVTPFISSSGEGGLSFMAVQSPGSQIQNIQTPEPVASFGGNPFA 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00603 674 Pfam Putative GTPase activating protein for Arf 12 123 IPR001164 GO:0005096
Vimu8g00603 674 SUPERFAMILY ArfGap/RecO-like zinc finger 10 123 IPR037278 -
Vimu8g00603 674 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 133 - -
Vimu8g00603 674 SMART arf_gap_3 11 127 IPR001164 GO:0005096
Vimu8g00603 674 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
Vimu8g00603 674 CDD ArfGap_AGFG 11 123 - -
Vimu8g00603 674 MobiDBLite consensus disorder prediction 275 290 - -
Vimu8g00603 674 MobiDBLite consensus disorder prediction 217 249 - -
Vimu8g00603 674 MobiDBLite consensus disorder prediction 262 290 - -
Vimu8g00603 674 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Vimu8g00603 674 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Vimu8g00603 674 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Vimu8g00603 674 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 134 IPR001164 GO:0005096
Vimu8g00603 674 PANTHER ARFGAP/RECO-RELATED 1 674 IPR044820 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00603 Vimu-Chr8 12588008 12594384 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00603 14 116 C2H2 Transcription Factor Family AT4G05330 34.211 2.65e-12 66.6