Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00597 ATGGCGAGGAAGCGAAAACAGCCACCTCGTCCCGCCAAATCGGCAGAGCGCGCTTTCAAACAGCCCCAGTTGAATCTAGAATCAGAGTATAAAGATGATGAACAATACGAAGAAGAAGAAGAAAGCCAAGAAATTGAAGAAGAATTAGCACCAAGCAATGAAACTTCGAAGCCCCCCTCCACTTCTTCATCCTCTCCTAGCGACGACGAGGAGCCAATCCAGAACCTTCTAGAATCCCTCGGCAAGAATGATATCGCCAAATTTCTCATCGAGGCCGCCTCCAAGCACCGCGACGTGGCGGACCGGATACGCCGCACCGCCGACGCCGACCCCGCGCACCGCAAGATCTTCGTGCACGGCCTCGGTTGGGACACTACCGTCGACACCCTCACTTCGGCGTTCTCCCCCTATGGCGACATCGAGGACTGCAAGGCCGTCGTGGACAAGGCCACTGGCAAGTCCAAGGGCTATGGCTTCGTACTCTTTAAGACCCGTCGCGCTGCGCGCAATGCCCTCCGCGAGCCGCAGAAAAGGATCGGCAACCGCATTGCCGCATGCCAGCTGGCTTCCGTGGGACCAGTCCAGTCGTCGCCGGCAACGATTTCGACGGCGCCGGGAGCTTCGGATTTCTCGCAGAGGAAGATCTACGTGAGCAATGTGAGTGCGGAATTGGACCCGCAGAGGCTTCTGTCGTTTTTTGCGCAGTTTGGGGAGATTGAGGAAGGACCTTTAGGGCTTGATAAGGTAACTGGGAAACCGAAAGGGTTCTGTTTATTTGTTTATAAGGGTGTGGAGGGTGCAAAGCGGGCGTTGGAGGTGCCGCACAAGAAGTTTGAGGGGCATATTTTGCACTGCCAGAAAGCAATTGATGGTCAGAAGCAACAGCGAGTGGGGGTGGTGCAAGGTAGTTCTCAGAATGGTGGGTATGTTGGTATGGGGGCAGTGCCGATGCCGGGGCACTTGATGGCTCCGGCGGGGCCAGCGGTAGGAGGAGGCGTTGCAGGGACGGCGGTGCAACCAGTTAATCCGGCAGTTGGGCAGGCACTGACGGCATTGCTGGCATCTCGGAATGCCGGGTTGCAATTGAGTGGGTTCTTGGGTATTGGGTCACCGGGGACGAACACTGGCGGTTATGTTGGACAAGGGAGTGTGAATCCCGGGGCTGTTGCTGTTGGTGGGTATGGGAATCAGGTAGCGTTGCCAAGTTCATATGCAAGCCAGCAGCAGGTGGGGATAGGTGGATCTGGAAGAGTGCAGCAGCCTCATGGTGTGGGACAGTATGGTGGCGTTGTGCCTTACATGGGTCACTAG 1311 0.5652 MARKRKQPPRPAKSAERAFKQPQLNLESEYKDDEQYEEEEESQEIEEELAPSNETSKPPSTSSSSPSDDEEPIQNLLESLGKNDIAKFLIEAASKHRDVADRIRRTADADPAHRKIFVHGLGWDTTVDTLTSAFSPYGDIEDCKAVVDKATGKSKGYGFVLFKTRRAARNALREPQKRIGNRIAACQLASVGPVQSSPATISTAPGASDFSQRKIYVSNVSAELDPQRLLSFFAQFGEIEEGPLGLDKVTGKPKGFCLFVYKGVEGAKRALEVPHKKFEGHILHCQKAIDGQKQQRVGVVQGSSQNGGYVGMGAVPMPGHLMAPAGPAVGGGVAGTAVQPVNPAVGQALTALLASRNAGLQLSGFLGIGSPGTNTGGYVGQGSVNPGAVAVGGYGNQVALPSSYASQQQVGIGGSGRVQQPHGVGQYGGVVPYMGH 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00597 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 181 IPR000504 GO:0003723
Vimu8g00597 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 283 IPR000504 GO:0003723
Vimu8g00597 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 206 IPR000504 GO:0003723
Vimu8g00597 436 SUPERFAMILY RNA-binding domain, RBD 207 311 IPR035979 GO:0003676
Vimu8g00597 436 SUPERFAMILY RNA-binding domain, RBD 107 194 IPR035979 GO:0003676
Vimu8g00597 436 MobiDBLite consensus disorder prediction 53 72 - -
Vimu8g00597 436 Gene3D - 202 314 IPR012677 -
Vimu8g00597 436 Gene3D - 24 198 IPR012677 -
Vimu8g00597 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 302 IPR000504 GO:0003723
Vimu8g00597 436 PANTHER GEO13361P1-RELATED 100 372 - -
Vimu8g00597 436 MobiDBLite consensus disorder prediction 31 48 - -
Vimu8g00597 436 SMART rrm1_1 115 187 IPR000504 GO:0003723
Vimu8g00597 436 SMART rrm1_1 214 286 IPR000504 GO:0003723
Vimu8g00597 436 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00597 Vimu-Chr8 12503228 12504942 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00597 209 288 C2H2 Transcription Factor Family AT2G19380 35.000 5.43e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00597 K12741 - qsu:112025393 424.091