Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00590 TCAATGGGTGCTGAAATGAATGTTTTTCCTTCACCTCCTGTTACCCTTACTGGTCTCCAGTGTTTCAACATTTTAGGGGTGATGGGTCATGTTGGAGGCATGAAATCTGAAACTTCTGATATACCTTTTCAGATTTTGAACCCCAACTGCGTGGAGGAAGAAGAATCTTCTGGGGTTGAAGCTACGGGCTTGTCTTTGAAACCTGGTGAAGAGCTTGAAGCTAATAGTTATTCTGCTAAAGGGAAAATCAGACACACTAAGCTTTGTGCAAGAGGACATTGGAGGTCAGCTGAAGATGCCAAACTTAAAGAGTTTGTTGCACAATTTGGACCTCAAAATTGGAACTCAATGGCAGAACATCTTCCAGGAAGATCAGGAAAAAGTTGCAGATTGAGGTGGTTTAATCAGCTAGATCCTAGAATTAACAGAAAGGCTTTCAGTGAGGAAGAAGAAGAGAGACTCTTGAATGCTCACAAAGTGTATGGTAACAAATGGGCCATGATTTCTAGACTCTTCCCTGGTAGGACTGATAATGCAGTGAAGAATCATTGGCATGTGATCATGGCTAGGAGGCAAAGGGAAAAGTCATGTGTCTTCAGAAGGAGAAAACCCACATTTCAGATCCTTCCACCAAAGGATTATGATTTGATCTTGCCAGTGAATAAAGGCAGTGAATCAACCATTTCAAGCACCATCATTGATGAATCTGCCTCAACAGGAACTAACCTCTCCTTCACTTCCTCTTCAGCAAAATCAACTCCTCTGGCTTTTCTAAAACATTGTCCTGTTCAGAATCTCCAAACCTTTGGTGGTGCTCTAATGGGTTTATCTGGAGAAAGCAGGACATCAGCCAGAGATGTGAGTTTCAACAAACATTTTGGTACTGGGAAAGGTTCATCTGAGACTGGGCACATGGGAAGCGTAATGGGTGTGGACCAATCTCATTACTCAGATTCAAACTCCTCAGAAGTTTCAGAATCAATTGCCACACACAAGACTACCAATTTATCAATGTACGGGGAAAGTGATAACAGGAGCAACATGTTATTCATTGATTTTCTTGGAGTAGGAACTATATAA 1080 0.4167 SMGAEMNVFPSPPVTLTGLQCFNILGVMGHVGGMKSETSDIPFQILNPNCVEEEESSGVEATGLSLKPGEELEANSYSAKGKIRHTKLCARGHWRSAEDAKLKEFVAQFGPQNWNSMAEHLPGRSGKSCRLRWFNQLDPRINRKAFSEEEEERLLNAHKVYGNKWAMISRLFPGRTDNAVKNHWHVIMARRQREKSCVFRRRKPTFQILPPKDYDLILPVNKGSESTISSTIIDESASTGTNLSFTSSSAKSTPLAFLKHCPVQNLQTFGGALMGLSGESRTSARDVSFNKHFGTGKGSSETGHMGSVMGVDQSHYSDSNSSEVSESIATHKTTNLSMYGESDNRSNMLFIDFLGVGTI 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00590 359 Gene3D - 144 203 - -
Vimu8g00590 359 CDD SANT 145 185 IPR001005 -
Vimu8g00590 359 ProSiteProfiles Myb-like domain profile. 138 188 IPR001005 -
Vimu8g00590 359 SUPERFAMILY Homeodomain-like 91 184 IPR009057 -
Vimu8g00590 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 138 192 IPR017930 -
Vimu8g00590 359 ProSiteProfiles Myb-like domain profile. 91 137 IPR001005 -
Vimu8g00590 359 PANTHER MYB PROTEIN-RELATED 91 311 - -
Vimu8g00590 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 137 IPR017930 -
Vimu8g00590 359 Pfam Myb-like DNA-binding domain 91 137 IPR001005 -
Vimu8g00590 359 Pfam Myb-like DNA-binding domain 143 186 IPR001005 -
Vimu8g00590 359 SMART sant 142 190 IPR001005 -
Vimu8g00590 359 SMART sant 90 139 IPR001005 -
Vimu8g00590 359 FunFam MYB transcription factor 91 142 - -
Vimu8g00590 359 CDD SANT 94 135 IPR001005 -
Vimu8g00590 359 Gene3D - 91 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00590 Vimu-Chr8 12419827 12421204 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00590 90 210 MYB Transcription Factor Family AT1G69560 75.207 4.51e-65 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu8g00590 Myb_DNA-binding 2.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00590 K09422 - qsa:O6P43_009928 343.969