Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00586 ATGGAAGATCATCAGGGGCAAGAGCAGCAGCAGCAACAACAGCAAAAGCAGCAACAACAACAGCAACCCAATAGTCCAAACCAGCAAGCCTCCGAGAGAACCGAACCCGTGAGGTCAAGATGGACTCCCAAGCCAGAACAAATCCTTATTCTCGAGTCCATCTTCAACAGTGGCATGGTTAACCCACCAAAAGATGAAACCGTCAGAATAAGGAAGCTGCTTGAGAAATTTGGAACCGTTGGTGATGCCAACGTCTTCTACTGGTTCCAAAACCGCCGCTCTCGCTCCCGCCGCCGCCAACGCCAGATTCAGGCCACCCTTAACCAGGGTGGCGGTGCAAGTACCAATCCATTTCAACACCACCATCAAAACAACCCTGCTCTTGTTGCAAACATGCCTTTTGGTAGTGGTAGTGCCACTTCCTCTTTCCTTAACCCGTCTTATATACCACCTCGTTCTTCTTCTTCTTCTTCCTCCTGTGGTGCTGCTGCTGCTGAAGAAAGCTTCGATGATTTCTTCCCACCGTCTACTCAAATGGGTTTTCCTGGAATTGATCATCATGCTTCGGCTGCATCATCTTCATCAGTTTTGTACCCTCTTGAAGCTTCCAATTTGAACTATCACTCTGGATTTGGGGGAATTTCAGGACTGATCACAGTGTTCATCAATGGGGTTCCAACAGAAGTTCCAAGGGGGCCAATGGACATCAAAACAGCTTTTGGTGAAGATGTAATGTTAGTTCATTCATCTGGAATTTCAGTTCCCACGAATGAGTTTGGTTTCTTGATGCAGGGCTTGCAGCATGGTGAAAGCTACTTTGTGGTTTCAAAGCAAACACAAGTATGA 846 0.4716 MEDHQGQEQQQQQQQKQQQQQQPNSPNQQASERTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQNRRSRSRRRQRQIQATLNQGGGASTNPFQHHHQNNPALVANMPFGSGSATSSFLNPSYIPPRSSSSSSSCGAAAAEESFDDFFPPSTQMGFPGIDHHASAASSSSVLYPLEASNLNYHSGFGGISGLITVFINGVPTEVPRGPMDIKTAFGEDVMLVHSSGISVPTNEFGFLMQGLQHGESYFVVSKQTQV 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00586 281 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Vimu8g00586 281 Pfam Homeodomain 38 98 IPR001356 GO:0003677
Vimu8g00586 281 MobiDBLite consensus disorder prediction 97 123 - -
Vimu8g00586 281 FunFam WUSCHEL-related homeobox 11 38 105 - -
Vimu8g00586 281 Coils Coil 1 21 - -
Vimu8g00586 281 PANTHER WUSCHEL-RELATED HOMEOBOX 11 17 278 IPR044558 GO:0003700|GO:0048830
Vimu8g00586 281 MobiDBLite consensus disorder prediction 1 43 - -
Vimu8g00586 281 SMART HOX_1 36 103 IPR001356 GO:0003677
Vimu8g00586 281 MobiDBLite consensus disorder prediction 7 36 - -
Vimu8g00586 281 Gene3D - 38 105 - -
Vimu8g00586 281 MobiDBLite consensus disorder prediction 101 123 - -
Vimu8g00586 281 ProSiteProfiles 'Homeobox' domain profile. 34 99 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00586 Vimu-Chr8 12330216 12332341 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00586 19 281 Wox Gene Family AT3G03660 51.579 1.22e-67 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vimu8g00586 Homeodomain 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00586 - - aprc:113866574 363.614