Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00572 ATGACCAGTGCTTTGAATTGCTTTTCCATATATAGGTATGTTGATGCACTTTGTTCCAATCCAAAACTTCTTTTGGTAAGGGTGTCAGTTCCAGATATTGATCAGTATCTGTACCTCAACTATTTGGAATCTGGTCTGAACAAAGAAAGCACATCAATGAATGACACCATGGTGGAAGAGGTTGAAGAAAGAGATCCAGAAAGCAATCCACTGAATGAGCCTCTGCTCAAGAGGAACAGGACATTGTCTTCCAATCCACTTGCTCTTGTTGGAGCAAAAGTTTCCTACATAGAAAGCTTGGACTATGAGATCAATGAGAATGATCTGTTCAAACAAGATTGGAGGAGCAGATCAAGAACTCAAGTGTTGCAGTACATATTCTGGAAATGGGCTCTTGCATTCCTTGTTGGACTTCTCACTGGTGTCATAGCCACTTTGATCAATCTTGCTATAGAGAACATTGCAGGGTACAAGCTTCTTGCTGTTGTCAAATTTATCCAAAAGGAAAGGTTTGCATCAAGGAACTGTGAGAGAGATTTTTGTTATATGAACTTGTTGCAAACTATGAATGAATATGAATATCTGATATATGGTGCAGCTGCTGGACCTGGAATACCAGAAATCAAAGCTTATCTTAATGGGGTTGATACTCCCAACATGTATGGTGCCACAACATTGTTTGTTAAGATAATTGGAAGCATTGGAGCTGTATCTGCAGGCCTAGATTTAGGAAAAGAGGGGCCCTTGGTACACATTGGTAGCTGCATTGCTTCATTACTTGGTCAAGGTGGCCCTGACAATTACAGGATCAAGTGGCGGTGGTTGAGGTATTTCAACAATGATCGTGACCGTAGGGATCTCATCACCTGTGGTGCTTCTTCAGGGGTCTGTGCAGCTTTCAGGGCACCAGTGGGCGGAGTTCTCTTTGCTCTTGAGGAGGTGGCAACATGGTGGAGAAGTGCTCTCCTCTGGAGAACTTTTTTCAGCACAGCTGTTGTTGTGGTTGTGCTTAGGGCCACCATTGAACTTTGCCACAAAGGAAAATGTGGCCTTTTCGGTGAAGGGGGGCTCATCATGTTTGATGTGAGTGATGTCACTGTGAGTTACAATGTAATCGATGTTATCCCTGTTGTTATCATTGGAGTCCTTGGTGGGGTATTGGGAAGCCTTTACAACTACCTTCTACATAAAGTCCTCCGTCTCTACAATCTCATCAATCAGAAAGGAAAAATGTACAAGCTCCTTCTCAGTCTTTCAGTTGCACTCTTCACATCAATATGCCAATATTGTCTCCCATTCCTAGCAAAATGCACCCCTTGTGATCCTTCCCTTTCAGAAATGTGTCCTACAAACGGACGTTCTGGAAACTTCAAACAATTCAACTGCCCAAATGGCCACTACAATGATCTTGCAACTCTGCTTCTGACCACCAATGATGATGCTGTTAGAAACATATTCTCAACTAACACTCCTTTTGAGTACCAACCTTTCTCCATCGTAATATTCTTTGGACTCTATTGCATACTAGGACTAATCACCTTTGGGATTGCTGTGCCATCAGGGCTCTTCCTACCAATCATTCTCATGGGTTCAGGTTATGGCAGACTTCTTGGAATCCTCATGAGACCTTATACAAACATTGATCAAGGGCTGTTTGCAGTCCTTGGTGCAGCCTCACTTATGGCTGGATCCATGAGAATGACTGTGTCCCTTTGTGTGATCTTCCTTGAACTAACCAACAACCTTCTCCTACTACCAATAACCATGATTGTTCTCCTCATAGCTAAAACTGTTGGAGACAGCTTCAACCCCAGCATCTATGAGATCATCCTGCACTTGAAAGGCCTCCCTTTCATGGATGCAAACCCTGAGCCATGGATGAGAAACCTCACTGTGGGAGAACTTGTTGATGTGAAGCCAGCAGTGATCAGCTTCAGAGGAGTAGAAAAGGTAGCCAATATAGTCGATGCCTTGAGAGACACCACACATAATGGTTTTCCTGTCATGGACTGTGGAGTGGTGCCAGCAACAGGAGTCACAAGTGAGGCTACAGAACTTCATGGAATCATTCTAAGAGCACACCTTATTCAGGTGCTAAAGAAGAAGTGGTTCTTGAAGGAGAAAAGGAGAACTGAGGAATGGGAAGTGAGAGAGAAATTTACATGGGTAGAGCTGGCTGAGAGAGAAGGAAACATTGAAGATGTGGCTGTGACTAAAGAAGAAATGGAGATGTTTGTTGATCTACACCCTCTCACCAACACAACTCCCTTCACAGTGCTAGAGAGCATGTCAGTAGCAAAAGCTATGGTTCTCTTCAGACAAGTAGGACTTCGTCATATGCTCGTTGTGCCAAAGTATCAAGCATCTGGGATTAACCTTAAATTTGTTGTCCTCAAAGGTGTCTCCTGTGATTGGGATCTTGACGAGGCAGGATCTTCTGGCACACAACATTCTGACAGTGTTTCCTCAATTGTCAAAACCAAAGAGGAAGTGAAGCTTTTGTTGTCAAATATGAATGAATGGACAAGCAGCTTTATTGGGACATTATCTCTATTCAGCATGAAGCTTTTCCTCAGTTTTGCATTATTTGGGTCATGCATGGAGAAGAAGATACAACATTGA 2622 0.431 MTSALNCFSIYRYVDALCSNPKLLLVRVSVPDIDQYLYLNYLESGLNKESTSMNDTMVEEVEERDPESNPLNEPLLKRNRTLSSNPLALVGAKVSYIESLDYEINENDLFKQDWRSRSRTQVLQYIFWKWALAFLVGLLTGVIATLINLAIENIAGYKLLAVVKFIQKERFASRNCERDFCYMNLLQTMNEYEYLIYGAAAGPGIPEIKAYLNGVDTPNMYGATTLFVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRATIELCHKGKCGLFGEGGLIMFDVSDVTVSYNVIDVIPVVIIGVLGGVLGSLYNYLLHKVLRLYNLINQKGKMYKLLLSLSVALFTSICQYCLPFLAKCTPCDPSLSEMCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSTNTPFEYQPFSIVIFFGLYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGILMRPYTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGELVDVKPAVISFRGVEKVANIVDALRDTTHNGFPVMDCGVVPATGVTSEATELHGIILRAHLIQVLKKKWFLKEKRRTEEWEVREKFTWVELAEREGNIEDVAVTKEEMEMFVDLHPLTNTTPFTVLESMSVAKAMVLFRQVGLRHMLVVPKYQASGINLKFVVLKGVSCDWDLDEAGSSGTQHSDSVSSIVKTKEEVKLLLSNMNEWTSSFIGTLSLFSMKLFLSFALFGSCMEKKIQH 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00572 873 CDD CBS_pair_voltage-gated_CLC_euk_bac 639 791 - -
Vimu8g00572 873 FunFam Chloride channel ClC3 121 439 - -
Vimu8g00572 873 SUPERFAMILY CBS-domain pair 623 790 IPR046342 -
Vimu8g00572 873 Gene3D Clc chloride channel 121 621 - -
Vimu8g00572 873 SUPERFAMILY Clc chloride channel 107 621 IPR014743 -
Vimu8g00572 873 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 53 788 - -
Vimu8g00572 873 PRINTS Plant CLC chloride channel signature 328 338 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vimu8g00572 873 PRINTS Plant CLC chloride channel signature 314 322 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vimu8g00572 873 PRINTS Plant CLC chloride channel signature 346 353 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vimu8g00572 873 PRINTS Plant CLC chloride channel signature 103 111 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vimu8g00572 873 PRINTS Plant CLC chloride channel signature 470 486 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vimu8g00572 873 Pfam Voltage gated chloride channel 199 599 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu8g00572 873 CDD ClC_6_like 98 619 - -
Vimu8g00572 873 PRINTS Chloride channel signature 518 538 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu8g00572 873 PRINTS Chloride channel signature 198 215 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu8g00572 873 PRINTS Chloride channel signature 606 620 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu8g00572 873 PRINTS Chloride channel signature 550 566 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu8g00572 873 PRINTS Chloride channel signature 568 587 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu8g00572 873 PRINTS Chloride channel signature 293 312 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu8g00572 873 PRINTS Chloride channel signature 229 248 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00572 Vimu-Chr8 12137507 12142238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00572 62 791 Ion Channels AT3G27170 77.397 0.0 1159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00572 K05016 - gmx:778094 1319.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03567 6 32927012 32931565 Vimu8g00572 8 12137507 12142238 PCT