Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00562 ATGTTCCAAGGTGGTACAATGAGACAGTTTTGCTACCTTTATCTTGTTCTTTCATGGTTCTTTTTCATCCCAAACACTTATGAGTTACAAGCTGCTCAGACACAAGCATTGTTGCAGTTAAGAGTTCATCTTGAGTATCCCTCTTCTTTACAGATATGGGAATATTACCAGGGGGACCTTTGTATGCTCTCTCCATCTGCAAACCTGAGCATTAAATGTGAAGATGATGAGGTAACTGAGCTTAAAATTACGGGTGAAAAATCTTTGAAGCCACCACGGTTCAATGGATATGCAGTTCCTAATCACACTCTATCCATGAATTTCTCCATTGATTCCTTTTTCATCACTTTGACAGAGTTGACCACCTTAAGGGTTCTTAGCTTGGTGTCCTTGGGGATTTGGGGGCCACTTCCTGATAAGATTCACCATTTCACTTTGCTTCAAGTTTTGGACTTGAGTTTCAATTTCTTATTTGGAGCCATTCCACCAAAAATATCCACAACGGTAACGCTTCACACGCTGACCCTTGATGACAATTATTTTAACACCACTATGCCCGATTCCTTTGATTCTCTGTCCAATCTGAATATCTTGAGTATGAAGAGCAATGGCTTAAAGGGTTCATTCCCCTCCTCACTGGGAAAAATTAAGACACTTGAAGTTATTTCCTTGTCCCACAATGAGTTGTCTGGTGACCTGCCTGGTCTCAGTTCTCTCACTGGCCTACATGTTCTGGATTTGAGAGAAAACCATTTAGAATCTGAACTACCATTGTTGCCAAAATCTGTGGTCACTGTGCTGCTTAGCAATAACTCATTTTCAGGAGAGATACCTAAGCAGTTTCAAGAACTGGATCAGCTTCAACATCTTGATCTTTCTTTAAATTTTCTCAGTAAGACACCCCCATCTGCCTTGTTTTCTCTGCCAGAAATAAGTTATTTGAATCTGGCAAGCAATGTGCTAAGTGGGACCCTCCCAGACAAACTTAACTGTGGTAGCAAACTTGGGTTTGTGGACATTTCTCGTAACAAGTTAAGTGGTGGACTTCCTTCTTGCTTGGCGAATACATCTGACAGTAGAGTTGTTAGATATGCTGGAAACTGTCTATCTGTTGACTCTCAGAACCAGCACAGAGGGTCTTATTGCAAAGAATCCACCTCTGGATGGAAAAGCTTCAAGACATGGGAAGTAGCTGTAGTAATGACCATCATTGTTGTACTTGTTCTTGTGCTTTTGTTTTCTAGTGTTTTCTTATGGAAAAAGTACCATTCCAGAAAGACAACTGGGCAAGATAACTCCTCAATAGCAGTTCCATCAGAGATCCTTGCAAATGCCAGATTTATTTCTCAAACAGTGAAGCTAGGGACACAAACTATTCCAACCTGTCGGCAATTTTCAATAGAGGAATTGAAGGAAGCCACAAAAAACTTTGATTTGTCAACTTATATTGGTCAAGGCTCCATGGGGAAGATGTACAAAGGTAAACTGGAGAATGGATCCTATGTGGCAATACGGTCTTTGGCTCTGTCAAAGAAATGCTCAATTCAAACTCTCAGAGCTAAATTGGATTTACTCTCAAAACTTCATCATCCAAATTTGGTTAGCCTTTTGGGTCATTGTATTGATGGTGGAGGACAAGATGATTCCAATTCCCATAAACTTCATCTTGTGTATGAGTATGTGCCAAATGGGAATTATCATGCCCATCTCTCAGAATTTTCTGTAGGGAAGGCACTTAAGTGGTCTGATAGATTGGCAATTTTGATTGGAGTTGCAAAGGCAGTGCATTTCTTACATACTGGTGTTATACCTGGCTGCTTTAGTAACCTACTGAAGACAAAAAATGTCTTGCTTGATGAATATCGTATTCCGAAACTAAGTGACTATGGTATGTCCATCATCACAGAAGAAATTGAAAAGTTTGAGACGGAATTACAAAGAAATTGTTCTTCTTTTTTCTATTGTAGCCTAAGGACAAAAGCAGATGATGATGTTTATAATTTTGGATTCATCCTGTTCGAATCACTTGTTGGACCCATAGCATGCGACAGAGGTGAAACATTTTTCCTAAATGAAAAGGCATCGTTTGGGAGTCAAGATGGTAGAAGAAAGATTGTGGATCCTATAGTGTTGACGACTTGCTCTCAAGAGTCTTTATCAATTGCAATATCAATAACAACCAAATGCATTTCTCCAGAATCTTCATTTCGTCCCTCTTTTGAGGATGTCTTATGGAACTTACAGACTTCTTTGAGACTTGAGTTTTTAAGATTTGAGACAAAGAGAGGGAACAAGATTGACATCCATATACTGTATCAGGAAACAAAATTGACATCCATATACTACATTAGAAGAAGAACTACATTAGCATTTAGGTGGAATCCACGCTCGGGAGGGGGGGAGGAGGGGGCAGAGCTTAGAGTAGGCAATGCCATTGCTGCTCCACCGGCTACGCCCTTATCGCACCGTCATTACGCTCTCACTGCCATAAGAATCCGAGAACTAGAGTTGAAAGCATAG 2520 0.4024 MFQGGTMRQFCYLYLVLSWFFFIPNTYELQAAQTQALLQLRVHLEYPSSLQIWEYYQGDLCMLSPSANLSIKCEDDEVTELKITGEKSLKPPRFNGYAVPNHTLSMNFSIDSFFITLTELTTLRVLSLVSLGIWGPLPDKIHHFTLLQVLDLSFNFLFGAIPPKISTTVTLHTLTLDDNYFNTTMPDSFDSLSNLNILSMKSNGLKGSFPSSLGKIKTLEVISLSHNELSGDLPGLSSLTGLHVLDLRENHLESELPLLPKSVVTVLLSNNSFSGEIPKQFQELDQLQHLDLSLNFLSKTPPSALFSLPEISYLNLASNVLSGTLPDKLNCGSKLGFVDISRNKLSGGLPSCLANTSDSRVVRYAGNCLSVDSQNQHRGSYCKESTSGWKSFKTWEVAVVMTIIVVLVLVLLFSSVFLWKKYHSRKTTGQDNSSIAVPSEILANARFISQTVKLGTQTIPTCRQFSIEELKEATKNFDLSTYIGQGSMGKMYKGKLENGSYVAIRSLALSKKCSIQTLRAKLDLLSKLHHPNLVSLLGHCIDGGGQDDSNSHKLHLVYEYVPNGNYHAHLSEFSVGKALKWSDRLAILIGVAKAVHFLHTGVIPGCFSNLLKTKNVLLDEYRIPKLSDYGMSIITEEIEKFETELQRNCSSFFYCSLRTKADDDVYNFGFILFESLVGPIACDRGETFFLNEKASFGSQDGRRKIVDPIVLTTCSQESLSIAISITTKCISPESSFRPSFEDVLWNLQTSLRLEFLRFETKRGNKIDIHILYQETKLTSIYYIRRRTTLAFRWNPRSGGGEEGAELRVGNAIAAPPATPLSHRHYALTAIRIRELELKA 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00562 839 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 263 387 - -
Vimu8g00562 839 SUPERFAMILY Protein kinase-like (PK-like) 458 747 IPR011009 -
Vimu8g00562 839 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 561 761 - -
Vimu8g00562 839 ProSiteProfiles Leucine-rich repeat profile. 218 240 IPR001611 GO:0005515
Vimu8g00562 839 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 440 560 - -
Vimu8g00562 839 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 30 261 - -
Vimu8g00562 839 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 107 748 - -
Vimu8g00562 839 ProSiteProfiles Protein kinase domain profile. 477 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00562 839 Gene3D Ribonuclease Inhibitor 261 375 IPR032675 -
Vimu8g00562 839 SUPERFAMILY L domain-like 88 370 - -
Vimu8g00562 839 Gene3D Phosphorylase Kinase; domain 1 449 560 - -
Vimu8g00562 839 Gene3D Ribonuclease Inhibitor 30 260 IPR032675 -
Vimu8g00562 839 Gene3D Transferase(Phosphotransferase) domain 1 561 763 - -
Vimu8g00562 839 Pfam Leucine rich repeat 264 321 IPR001611 GO:0005515
Vimu8g00562 839 Pfam Leucine rich repeat 170 229 IPR001611 GO:0005515
Vimu8g00562 839 Pfam Protein tyrosine and serine/threonine kinase 479 744 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00562 Vimu-Chr8 12033311 12041699 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00562 15 692 Miscellaneous Gene Families AT5G14210 54.167 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Vimu8g00562 PK_Tyr_Ser-Thr 2.1e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00562 - - gmx:100780663 1207.59