Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00561 ATGAACAATAGAACAAGAATAATAGATCCAAAGAGCGGCTTCAACCGCGTTTCCAGAACCTTCCACAGCCTCAAACCACCATTCCCACTCCCTGCGCCCAATGCTGCCGTCTCTGCCGTATCATACGCCCTCTCCCTCCGCCGTAATTCGCCGTTTCCAGACTCTGTCACTGCCATCGTGGATGCCGCCACCGGCCGCAGTATATCCTACGAAGAACTCATCCACCGTGCCGAAACCCTAGCCGCAAACCTAGCCACAGTTCTCAAACTCTCCAAAGGAGACGTCGCGTTCCTTCTCTCCCCAAACCTTATCCAAGTTCCCATCCTTTACTTCGCGCTCCTCTCCGTCGGCGTCATCATCTCCCCCGCGAATCCTCTCTCTACGCGCTCCGATCTCACGCGCGTCTTCCACCTCAGCAAACCCGCAATCGTCTTCATAGCGACTTCAATCGCGGAGCGCGATTTTGGTGTCCGTACTGCCCTCCTCGACTCCCCCGAGTTCGACTCCCTCGCTCGGACGAAGATTCACAATCCGAATCCACTGGCATCCCCTGCGCGAGTGACTCAATCTGACGTGGCAGCGATTCTGTACTCCTCCGGGACGACGGGGATGGTAAAGGGCGTGATGCTCACGCACCGTAACGTAACAGCGTTAGCCGGGGGATTCCACGCCGTTGGAGTGAAGAGAAAGGAGCCCGCGGTGTTCTTGTTCACGATGCCGTTTTTCCACCTGTTCGGCTTCGCCTACAGCTTCAAGGCGATGGTTCTGTCAGAGACGGTGGTGATAATGGAGAGATTCAGTTTGAGGAGAATGCTGAGCGCCGTTGAGAGGTTCCGGGTTACAAATCTTGCGGTGGTGCCGTCGCTGTTGGTGGCTTTGACGAAGGATAGTGTCACCCGCGAGTACGATTTGAGGACGTTAGAGGGGATTGCATGCGGCTCGGCTCCACTTGGAAAGGAAACCGCCGAGGCTTTCAAAGCCAAGTTCCCCAAAGTCGTAGTTCTCCAGGGATATGGTTTAACCGAAGCAGGTGCTGGGGTTGCCAGAACCTTTGTTGAAGATGCTAAGCAAGTGGAAACAACAGGGAAACTGCTGTCGAGGGTGGAAGCCAAAATTTTGAATCCAGACACAGGAGAAGCCATGTTTCCAGGTGAACAGGGAGAACTCTGGCTCAAATCACCTACTATTATGAAAGGTTATGTTAACGAGCCAGAAGCAACCTCAGCAACTTTGGTGAATGGGTGGTTAAGGACTGGAGACCTTTGTTATTTTGATAATGATGGTTTCTTGTATGTTGTTGATAGGTTAAAGGAGTTGATCAAATACAAGGGCTACCAGGTTGCTCCAGCGGAGCTAGATAAATGGCTCCTGTCTCACCCAGAGATAAATGATGCTGCAGTTATTCCATACCCTGATGAAGAAGCTGGGCAAGTTCCCATGGCGATCGTAGTAAGACAACCCCAAAGTTCCCTCACTGAAGCAGAAATAATCGATTTTGTCGCCAAACAGGTTGCACCATACAAGAAAATAAGGCGCGTAGCATTTGTGGACGCAATACCGAAGAATGCCTTGGGAAAGACACTGAAGAGTGACTTGAAAAAACTTGCTACCTCTAGATTATAA 1623 0.5151 MNNRTRIIDPKSGFNRVSRTFHSLKPPFPLPAPNAAVSAVSYALSLRRNSPFPDSVTAIVDAATGRSISYEELIHRAETLAANLATVLKLSKGDVAFLLSPNLIQVPILYFALLSVGVIISPANPLSTRSDLTRVFHLSKPAIVFIATSIAERDFGVRTALLDSPEFDSLARTKIHNPNPLASPARVTQSDVAAILYSSGTTGMVKGVMLTHRNVTALAGGFHAVGVKRKEPAVFLFTMPFFHLFGFAYSFKAMVLSETVVIMERFSLRRMLSAVERFRVTNLAVVPSLLVALTKDSVTREYDLRTLEGIACGSAPLGKETAEAFKAKFPKVVVLQGYGLTEAGAGVARTFVEDAKQVETTGKLLSRVEAKILNPDTGEAMFPGEQGELWLKSPTIMKGYVNEPEATSATLVNGWLRTGDLCYFDNDGFLYVVDRLKELIKYKGYQVAPAELDKWLLSHPEINDAAVIPYPDEEAGQVPMAIVVRQPQSSLTEAEIIDFVAKQVAPYKKIRRVAFVDAIPKNALGKTLKSDLKKLATSRL 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00561 540 SUPERFAMILY Acetyl-CoA synthetase-like 55 538 - -
Vimu8g00561 540 FunFam 4-coumarate--CoA ligase 2 438 539 - -
Vimu8g00561 540 Gene3D - 438 539 IPR045851 -
Vimu8g00561 540 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 17 534 - -
Vimu8g00561 540 CDD 4CL 49 532 - -
Vimu8g00561 540 Gene3D - 32 437 IPR042099 -
Vimu8g00561 540 Pfam AMP-binding enzyme 55 442 IPR000873 -
Vimu8g00561 540 ProSitePatterns Putative AMP-binding domain signature. 195 206 IPR020845 -
Vimu8g00561 540 Pfam AMP-binding enzyme C-terminal domain 452 526 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00561 Vimu-Chr8 12005123 12020543 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00561 3 536 Monolignol Biosynthesis Gene Families AT5G63380 47.559 2.95e-179 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00561 K01904 - gmx:100801143 825.083