Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00557 ATGGAGAAGAAGATGGCAGCTACATTCCCACCCGTCACAGATCTAAGGAGCGGTTTCAATCCAGCTTCCAGAACCTTCCACAGCCTCAAACCACCACTTCTTCTCCCTCCTCCCAACGCTGCCATCTCCGCCGCTTCCTACGTCCTCTTCCTCCGTCGCAACTCGCACTTTCCGGACTCCTCAACCGCCGTTGTCGACTCCGCCAATGGCCACAGCCTCTCCTACGGCGAACTCATCCACCGCGCTGAGAACCTAGCCGCCAACCTCGCCACAGTTCTCAAACTATCAAAAGCCCACACCGCGCTCGTTCTCTCCCCTAACATCATCCAAGTTCCGATCCTCTGCTTCGCGCTCCTCTCCCTCGGCGTGGTCGTCTCCCCCGCGAATCCTCTTTCCACACGCTCCGAGATCACGCGCCTCTTCCACCTCAGCAAACCCGCCATCGTCTTCGCAGTGACTTCAAACGCAGAAAAAACACACGAGTTCCATGTCCGTACGGTCCTCCTCGACTCGCCAGAGTTCGACTCGCTCACCAGGACAAAGATACAGCCTCTGAGTCCAATCGCGTCCCCCACGCCGGTGACTCAGTCCGACGTGGCTGCGATTCTGTACTCTTCCGGCACGACGGGAAAGATGAAGGGCGTTATGCTTACTCACCGCAACCTAACCGCAGTAGCCGCGGGATACGACACGGTCCGCACGAAGCGCGCGGAGCCCGCGGTGTACCTGTATACGGTGCCGTATTTCCACGTGTACGGTTTCACCTTCAGCCTTGGAGCGATGGTGCTGTCGGATACGGTGGTGATAATGGAGAGGTTCAGTTTTAGGGGCATGCTGAGCGCCGCGGAGAGGTTCCGAGTGACGCACATTACGGTGGTGCCGGCACTGGTAGTAGCTATGACGAAGGACAAAGTGATAGACGGATACAATTTGACGTCTTTGGAAGGGATCGTTTGCGGTGGAGCTCCACTGAGGAAGGAAACCGATGAAGCTTTCAAAGCCAAGTTCCCCAAGGTCCTCGTCATGCAGGCTGATATATGGCCAACCAATCAATTTGTCTGGTGGTTGGCTAAATCAGCTGGTTTGTTCTCGGAACTGGGATACGGTTTAACTGAATCTGTGGTAACCCGAACCACTCCCGAGGAAGCTAATCACGTGGGAACAGTGGGTAGACTGAAACCAGACATAGAAGCAAAAGTTGTTAACCCACAAACAGGGAAACTCATGTTTCCTGGTGAAAAGGGGGAACTATGGATCAAAGGACCTTATGTTATGAAAGGTTATGTTGATGATCGAGAAGCAACTTCAGCAACTTTGGTGAATGGATGGTTAAGGACTGGAGACCTTTGTTATTTCGATAATGATGGTTTCTTGTATATTGTTGATAGGTTAAAAGAGTTGATCAAATACAAGGGCTACCAGGTTGCTCCAGCAGAGCTAGAAGAGTTGCTGCTATCTCACCCAGACATACTTGATGCTGCAGTTATTCCATACCCTGACAATGAAGCAGGCGAAGTGCCCATGGCGTTTGTTGTGAGACAACCTCAAAGTTCCCTTGGCGTAGCACAAGTTATCGATTTTGTTGCCAAACAGGTTACACCATACAAGAAAGTAAGACGTGTAGCATTTGTTGATTCCATTCCCAAGAATGCTTCAGGAAAGATTCTGAGAAAGGATTTACGTAAAGTTGCGCTCTCTAAGTTATGA 1707 0.5149 MEKKMAATFPPVTDLRSGFNPASRTFHSLKPPLLLPPPNAAISAASYVLFLRRNSHFPDSSTAVVDSANGHSLSYGELIHRAENLAANLATVLKLSKAHTALVLSPNIIQVPILCFALLSLGVVVSPANPLSTRSEITRLFHLSKPAIVFAVTSNAEKTHEFHVRTVLLDSPEFDSLTRTKIQPLSPIASPTPVTQSDVAAILYSSGTTGKMKGVMLTHRNLTAVAAGYDTVRTKRAEPAVYLYTVPYFHVYGFTFSLGAMVLSDTVVIMERFSFRGMLSAAERFRVTHITVVPALVVAMTKDKVIDGYNLTSLEGIVCGGAPLRKETDEAFKAKFPKVLVMQADIWPTNQFVWWLAKSAGLFSELGYGLTESVVTRTTPEEANHVGTVGRLKPDIEAKVVNPQTGKLMFPGEKGELWIKGPYVMKGYVDDREATSATLVNGWLRTGDLCYFDNDGFLYIVDRLKELIKYKGYQVAPAELEELLLSHPDILDAAVIPYPDNEAGEVPMAFVVRQPQSSLGVAQVIDFVAKQVTPYKKVRRVAFVDSIPKNASGKILRKDLRKVALSKL 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00557 568 Pfam AMP-binding enzyme 53 470 IPR000873 -
Vimu8g00557 568 CDD 4CL 54 560 - -
Vimu8g00557 568 FunFam 4-coumarate--CoA ligase 2 466 567 - -
Vimu8g00557 568 Gene3D - 466 566 IPR045851 -
Vimu8g00557 568 Gene3D - 37 465 IPR042099 -
Vimu8g00557 568 Pfam AMP-binding enzyme C-terminal domain 479 554 IPR025110 -
Vimu8g00557 568 SUPERFAMILY Acetyl-CoA synthetase-like 51 565 - -
Vimu8g00557 568 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 21 562 - -
Vimu8g00557 568 ProSitePatterns Putative AMP-binding domain signature. 202 213 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00557 Vimu-Chr8 11914265 11927915 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00557 12 565 Monolignol Biosynthesis Gene Families AT5G63380 46.435 3.67e-173 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00557 K01904 - gmx:100784234 821.617