Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00553 ATGGCAGTGTTTAGTTCTTCTTTCACATCACCCGTTATCTCAAAGAACGATGGTGCCAACTCTACTGGCAGTAACTCCTTACGAGCACTTGCATTAGTAGGAGCTGGTGTCACGGGGATTTTAAGTTTTTCAACAACAGCATTAGCTGATGAAGCTGAGCATGGCCTGGCATGTCCTAGCTATCCATGGCCTCACAAGGGCATTCTCAGTTCATATGATCATGCTTCGATTCGTCGTGGTCATCAAGTTTATCAAGAAGTCTGTGCTTCATGTCATTCCATGTCTTTGATATCATACCGTGATTTGGTTGGTGTCGCTTATACAGAAGAAGAGGTAAAGGCTATGGCAGCGGAGATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTTACACGCCCTGGTAAACTCAGTGATCGCTTTCCTCAGCCATATGCAAATGAAGCCGCTGCTAGGTTTGCTAACGGTGGAGCCTATCCTCCAGATCTTAGTCTCATCACCAAAGCTCGACACAATGGTCAGAACTATGTGTTTGCACTTTTAACTGGATATCGTGACCCTCCTGCTGGCGTTTCGATTAGAGAAGGACTGCACTATAATCCTTACTTTCCCGGCGGGGCCATTGCAATGCCTAAAATGCTTAATGATGGTGCTGTTGAATATGAAGATGGCACCCCTGCTACAGAATCTCAGATGGGTAAAGATGTGGTGTCATTCCTGAGCTGGGCAGCCGAACCCGAGATGGAGGAAAGAAAACTGATGGGATTTAAATGGATATTTGTTCTATCACTTGCATTACTTCAAGCAGCCTATTACCGCCGCCTGCGGTGGTCCGTTCTAAAGTCTCGCAAGCTGGTTCTTGATGTTGTCAACTAG 879 0.463 MAVFSSSFTSPVISKNDGANSTGSNSLRALALVGAGVTGILSFSTTALADEAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYQEVCASCHSMSLISYRDLVGVAYTEEEVKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYANEAAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATESQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00553 292 Gene3D - 52 247 IPR036909 GO:0009055|GO:0020037
Vimu8g00553 292 PRINTS Cytochrome C1 signature 81 100 IPR002326 GO:0009055|GO:0020037
Vimu8g00553 292 PRINTS Cytochrome C1 signature 208 227 IPR002326 GO:0009055|GO:0020037
Vimu8g00553 292 PRINTS Cytochrome C1 signature 247 262 IPR002326 GO:0009055|GO:0020037
Vimu8g00553 292 PRINTS Cytochrome C1 signature 228 247 IPR002326 GO:0009055|GO:0020037
Vimu8g00553 292 PRINTS Cytochrome C1 signature 159 183 IPR002326 GO:0009055|GO:0020037
Vimu8g00553 292 PRINTS Cytochrome C1 signature 61 80 IPR002326 GO:0009055|GO:0020037
Vimu8g00553 292 PRINTS Cytochrome C1 signature 197 208 IPR002326 GO:0009055|GO:0020037
Vimu8g00553 292 PRINTS Cytochrome C1 signature 126 146 IPR002326 GO:0009055|GO:0020037
Vimu8g00553 292 ProSiteProfiles Cytochrome c family profile. 75 182 IPR009056 GO:0009055|GO:0020037
Vimu8g00553 292 Pfam Cytochrome C1 family 63 279 IPR002326 GO:0009055|GO:0020037
Vimu8g00553 292 FunFam Cytochrome c1, heme protein 52 247 - -
Vimu8g00553 292 FunFam Cytochrome c1, heme protein, mitochondrial 248 292 - -
Vimu8g00553 292 PANTHER CYTOCHROME C1 14 290 IPR002326 GO:0009055|GO:0020037
Vimu8g00553 292 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 247 291 IPR021157 -
Vimu8g00553 292 Gene3D - 248 291 - -
Vimu8g00553 292 SUPERFAMILY Cytochrome c 56 246 IPR036909 GO:0009055|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00553 Vimu-Chr8 11869054 11871353 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00553 3 292 Chloroplast and Mitochondria Gene Families AT3G27240 86.007 8.31e-175 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00553 K00413 - gmx:100803087 548.51