Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00539 ATGGAGTCATGTGTCCCACCTGGGTTTCGGTTCCACCCAATAGATGAAGAGCTTGTTGGTTACTATTTGAGGAAGAAGGTGGCATCTCAAAATATTGACCTTGACATTATCAGAGAGATGGATCTATATCATAGATGCAGGATCAGGTATGAAGAGCAGAATGAGTGGTATTTCTTCAGCCATAAAGATAAAAAGTATCCAACAGGGGCAAGAACTAACAGAGCTACCATGGCGGGGTTTTGGAAGGCTATAGGAAGAGACAAAGCAGTGTATGACAAGGCAAAACTTATTGGGATGAGAAAAACCCTTGTTTTCTACAAAGGAAGAATTGTGTATGAATTGCGATGCTGTTGTCATTTCATAAGCATGTGA 372 0.4086 MESCVPPGFRFHPIDEELVGYYLRKKVASQNIDLDIIREMDLYHRCRIRYEEQNEWYFFSHKDKKYPTGARTNRATMAGFWKAIGRDKAVYDKAKLIGMRKTLVFYKGRIVYELRCCCHFISM 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00539 123 Pfam No apical meristem (NAM) protein 6 109 IPR003441 GO:0003677|GO:0006355
Vimu8g00539 123 SUPERFAMILY NAC domain 3 109 IPR036093 GO:0003677|GO:0006355
Vimu8g00539 123 Gene3D NAC domain 14 113 IPR036093 GO:0003677|GO:0006355
Vimu8g00539 123 ProSiteProfiles NAC domain profile. 5 123 IPR003441 GO:0003677|GO:0006355
Vimu8g00539 123 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00539 Vimu-Chr8 11675162 11675814 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00539 2 109 NAC Transcription Factor Family AT4G36160 81.197 2.02e-66 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu8g00539 NAM 5.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00539 - - pvu:PHAVU_002G110900g 210.305