Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00538 ATGGAGTTTGAATCAGAAGACAGTGCTTACAAATGTTATAGCATGTATGCTGTCCTGAAAGGTTTTAGCATAAGAAAGGATTTTGTCAACAAAAGTAGGATAAATGGTACAGTGGTATCCAGAAGATACACCTGCCATAGACAGGGTTATCGGCCAAACAAAAATGGTACATACTTGAGGAAATTTCAGAAGGAAACAAGAACTGGTTGCTTGGCACACATGACTATTGCTCGTCAGCCGAATGGAAAATTTCAGGTCACTCATTTTGAAACTGAGCACAATCATGAGTTTGTAAAACCCTGTACTGCTCATATGTTACCATCACAGAAAAAATTGAGTTTTGCTCAAGCTATTGAAGCAAACTTAACTGTATCCGAAATTGAAGATGGATCCAACATGGTGCCTACATCAACATCTGAAACCAATTGCAAGGCTCGTCTGGATTATGATCCCGTCAACCATGAATATAAACTACCTTTCAAATGTTCTAGCAAAATGAAGGGAGAAATTGAAAAGATTAAGCTTCACTTCCAAATCAAGCAAAGAAAGAATCCTTCTTTCTTTTACGCATTCCAGCTTGATGCTGATGATCAAATAACTAATACATTTTGGGCTGATATAAAGATGATTATAGATTACACTGATTTTGGTGATGTTGTTTGTTTTGATAGCAGTTATAAATACTATAAGGACTCCTGGCCATTTGTTCCATTCCTTGGTATAAATAATCACCAGCAAATGACTATCTTTGGGGTTGCACTTCTTCAGAATGAATCTGTAGAATCTTTGAAGTGGCTGTTTATAGTTTTCCTTGAGGCAATGTCTGGAAGAAAGCCAAAGACGATACTTACAGATCTAGATGTTGTAACAGCTGAAGCAATCAATGTCATACTACCCCAAACAAATCATCGAGTTTGTGTATGGCATGTTTATCAAGATGCCCTCAAGCATCTGAGTCATGTTTCTGCTGGATCTGATTCTTTCATAAATGATTTAAGAAGCTGCCTTTTTCATCACGAGGAGGAGGATTATTTTGTTAATGAATGGAATGCTCTCCTGGACAAATATAATCTGTGGGAAAATGAATGGTTGCAACAAATATTTGGAAGCAGACATCGATGGGCCATAGCATATGGAAGACAATATTTTTGTGCTGACATAGAAAGCGTGCTACTGAGACAAAATCTTACTGGCAACCTGAAAAGGTACCTAAAGCATGACTCCGACATTCTTCCACTTTTCAAGTATCTTGTTAAGGTTGTTACTGATTGGCACTACAAGGAATTAGAAGCCAATTATGACATGAACCAGCGTATGCCACCGTTGCTGGGGGATATCATTACGTTAAAGCATGCAAGAGTTCCATACACACCAAAGATATTTGAGTTATTTCAGAAAGAATATGAAGCATGTTTGAATCTAGTGATAAAGCATTGCACTGAAAATGGATCATTTTATAATTATAAAGTTAGCGTATATGAACAGGCACGGGAGTATTCTGTTACATTTGATTCTTCGGATGAGACAATCAGTTGTAGCTGTATGAAATTTGAGTACGTGGGGATATTATGCTGCCATGCATTAAAAGTTCTTGACTATGTGAACATAAGGATTGTTCCATCTCGGTACATATTAAAGAGATGGACAAAAGATGCTAGGGTTTGA 1665 0.3724 MEFESEDSAYKCYSMYAVLKGFSIRKDFVNKSRINGTVVSRRYTCHRQGYRPNKNGTYLRKFQKETRTGCLAHMTIARQPNGKFQVTHFETEHNHEFVKPCTAHMLPSQKKLSFAQAIEANLTVSEIEDGSNMVPTSTSETNCKARLDYDPVNHEYKLPFKCSSKMKGEIEKIKLHFQIKQRKNPSFFYAFQLDADDQITNTFWADIKMIIDYTDFGDVVCFDSSYKYYKDSWPFVPFLGINNHQQMTIFGVALLQNESVESLKWLFIVFLEAMSGRKPKTILTDLDVVTAEAINVILPQTNHRVCVWHVYQDALKHLSHVSAGSDSFINDLRSCLFHHEEEDYFVNEWNALLDKYNLWENEWLQQIFGSRHRWAIAYGRQYFCADIESVLLRQNLTGNLKRYLKHDSDILPLFKYLVKVVTDWHYKELEANYDMNQRMPPLLGDIITLKHARVPYTPKIFELFQKEYEACLNLVIKHCTENGSFYNYKVSVYEQAREYSVTFDSSDETISCSCMKFEYVGILCCHALKVLDYVNIRIVPSRYILKRWTKDARV 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00538 554 ProSiteProfiles Zinc finger SWIM-type profile. 499 535 IPR007527 GO:0008270
Vimu8g00538 554 Pfam MULE transposase domain 219 312 IPR018289 -
Vimu8g00538 554 Pfam FAR1 DNA-binding domain 13 98 IPR004330 -
Vimu8g00538 554 Pfam SWIM zinc finger 488 534 IPR007527 GO:0008270
Vimu8g00538 554 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 1 553 IPR031052 GO:0006355
Vimu8g00538 554 SMART 26again6 510 537 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00538 Vimu-Chr8 11656383 11658425 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu8g00538 MULE 2.7e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00538 K17604 - gmx:102659753 889.026