Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00503 ATGCCAAGATGCAGACACGGGTATTTTCATGTGGTGAACAACGACTACACACACTGGGAAATGTATGCCATTGGAGGGAGTGCGAACCCCACCATCAACAGCCAAGGAAACAGGTTTCTTGCTCCAGACATTAGGTTCAGCAAAGAGGTAACAAAGCATGAGGATGCTCCACAGAGTGAGTGGATGAGCTGGAATTGGAGATCAGAGGGTGACATGTTCTTGAATGGAGCATACTTCAGACAATCTGGTGCTGGTGCTTCTTCCATCTATGCTAGGGCTTCAAGTCTCAGTGCAAGACCTTCTTCTCTTGTTGGATCCATGACTGTCACTGCTGGTGCACTTACCTGTAGAAAGGGAAACCGTTGCTGA 369 0.4797 MPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDIRFSKEVTKHEDAPQSEWMSWNWRSEGDMFLNGAYFRQSGAGASSIYARASSLSARPSSLVGSMTVTAGALTCRKGNRC 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00503 122 SUPERFAMILY Pectin lyase-like 1 115 IPR011050 -
Vimu8g00503 122 PANTHER PECTATE LYASE 18-RELATED 1 120 IPR045032 GO:0030570
Vimu8g00503 122 Gene3D - 1 115 IPR012334 -
Vimu8g00503 122 PRINTS Pollen allergen Amb family signature 22 41 IPR018082 -
Vimu8g00503 122 PRINTS Pollen allergen Amb family signature 64 88 IPR018082 -
Vimu8g00503 122 PRINTS Pollen allergen Amb family signature 93 116 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00503 Vimu-Chr8 11247939 11248444 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00503 1 122 Polysaccharide Lyase AT4G24780 81.967 6.40e-66 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00503 K01728 - gmx:100810380 244.973