Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00494 ATGGCAGCAGCATGCGTTGGTGGTGCACTTCTTTCTGCTTTCCTGCAGGTTGCATTTGACAGGCTAGCTTCTCCTGAGGTTCTACACTTCTTTCGTCGAAGGAAGCTCAATGAAGCACTGCTCAGCAAATTGAACATCAAAATGTTGTCCATCAATTCTCTTGCTGATGATGCAGAGCAAAAGCAGTTCCGAGATACACGGGTCAAGGCATGGCTTTTTGCTGTCAAAGATGCTGTGCTTGAAGCAGAGGACCTCTTGGATGAAATAGACTATGAACTCACCAAATGTGAAATGGAAGCTCAGTCTGAATCTCAAAGCCTTAGTAAAAAGGTATCAAGTTTCTTCCATTCAACTTTCAGTTCATTTAACAGGAAAATTGACTCAGGATTGAAACAAGTCCTCGAGAAGCTAGAATATCTCGCGAGCCAAAAGGGCGATCTTGGTTTGAAAGAGGCTACTTATTCTGGTCTTCGACCAGGCAGTGTAGTCCAACAAAAATTGCCATCAACTTCCTTGGTGGCTGAAAATGTTATTTATGGAAGAGATGATGACAAAGAAACTATCTTTAATTGGCTCACATATGAAACTGACAATCGTAACCAGTTATCAATACTTTCTATTGTGGGCATGGCTGGAGTGGGTAAGACCACACTTGCCCAACATGTTTACAATGACCCAAGGACGGAGGAGGCTGGTTTTAGCATCAAAGCTTGGGTTTGTGTTTCAGATGATTTTGATGTTTTGTTGGTGACAAGTACAATTCTTGAGGCAATCACTAAATCCAAAGATGATAGTAGAAACCTAGAAATGGCTCATGGAAGACTGAAAGAAAAACTGTCGGGGAAAAAGTTCTTTCTCGTATTGGATGATGTGTGGAATGAAAGACGAGAGAAATGGGAAGCTGTGCAAACTCCTCTTAATTTTGGGGCATCCGGAAGTAAAATTCTTGTAACAACACGTAGTGAGAAAGTTGCTTCTACAATGCGGTCAAGTAAAGTGCATCGCCTAATGCACTTACAAGAAGATCATTGCTGGGATGTTTTTGCAAAACATGCACTCCAAGATGATCATCCTCAATTGAATGCTGAGCTGAAGGATATTGGCATAAAGATAGTTAAAAAGTGTAAAGGATTACCTCTAGCCCTGAAAGCAATTGGAAGTCTTCTGCACACAAAGTCATCTTTTTCAGAATGGGAATGTGTATTGGTAAGCAAGATATGGGACACGCCAATAGAAGAGAATGAAATTATGCCTGCTCTTTTACTGAGCTATCATCACCTTCCTTCGCATCTCAAGCGGTGTTTTGCTTATTTTGCTTTGTTTCCCAAAGATTACAAGTTTGACAAGCAGAGTATAATTTTGTTATGGATAGCTGAAAATTGTCTACAATGCCCCCAACATAATAAGAGTCCAGAAGAAATTGGTGAATTGTACTTTGATGATCTATTATCAAGGTCTTTCTTTCAACAGTCAAGTGGATTCGAATCATGTTTTGTCATGCATCACCTTCTCAACGATTTGGCAAAATATGTTGTGGAGACATATATTTCAACTTAG 1557 0.4014 MAAACVGGALLSAFLQVAFDRLASPEVLHFFRRRKLNEALLSKLNIKMLSINSLADDAEQKQFRDTRVKAWLFAVKDAVLEAEDLLDEIDYELTKCEMEAQSESQSLSKKVSSFFHSTFSSFNRKIDSGLKQVLEKLEYLASQKGDLGLKEATYSGLRPGSVVQQKLPSTSLVAENVIYGRDDDKETIFNWLTYETDNRNQLSILSIVGMAGVGKTTLAQHVYNDPRTEEAGFSIKAWVCVSDDFDVLLVTSTILEAITKSKDDSRNLEMAHGRLKEKLSGKKFFLVLDDVWNERREKWEAVQTPLNFGASGSKILVTTRSEKVASTMRSSKVHRLMHLQEDHCWDVFAKHALQDDHPQLNAELKDIGIKIVKKCKGLPLALKAIGSLLHTKSSFSEWECVLVSKIWDTPIEENEIMPALLLSYHHLPSHLKRCFAYFALFPKDYKFDKQSIILLWIAENCLQCPQHNKSPEEIGELYFDDLLSRSFFQQSSGFESCFVMHHLLNDLAKYVVETYIST 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00494 518 PRINTS Disease resistance protein signature 204 219 - -
Vimu8g00494 518 PRINTS Disease resistance protein signature 278 292 - -
Vimu8g00494 518 PRINTS Disease resistance protein signature 375 389 - -
Vimu8g00494 518 FunFam Probable disease resistance protein At1g61300 162 333 - -
Vimu8g00494 518 Pfam Rx N-terminal domain 11 104 IPR041118 -
Vimu8g00494 518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 437 IPR027417 -
Vimu8g00494 518 Gene3D - 338 422 IPR042197 -
Vimu8g00494 518 Gene3D - 160 334 IPR027417 -
Vimu8g00494 518 Gene3D - 423 510 IPR036388 -
Vimu8g00494 518 PANTHER DISEASE RESISTANCE PROTEIN RP 41 510 IPR044974 GO:0006952
Vimu8g00494 518 Gene3D - 33 128 - -
Vimu8g00494 518 Pfam NB-ARC domain 182 424 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00494 Vimu-Chr8 11096240 11097796 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00494 198 512 WRKY Transcription Factor Family AT5G45050 24.233 2.64e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00494 - - vum:124832088 943.725