Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00484 ATGATGACGATTGGCATGCCATCCACCACGAGCTTCTTGTCAACTCATGCTTCTTCACAAAGCCTGCTTCTTCTTTTGCGTCACTTTCCCGCCAAACCCGCACCACGCATTCTAAGCTTCTATCCGTTTGTTTCTTCTCTAGGTGTGGCCGGGAACGACAAAGAAGTTAATCTAAGAGAAGAAATAAGGATTGCAGCGATGGCGCATCAAGGGGAACCGGCAAAGCTGCGGTGGGGCGAGCTGGAGGAGGACGACGGCGAGGATCTCGACTTCCTCCTCCCGCCGCGACAGTTCATAGGGCCCGACGACAACGGGATAAAGAAGGTGATTGAGTACAAGTTCGACGAGGACGGTAACAAGGTGAAGATAACAACCACCACGCGCACTCGAAAGCTCGCCAACGCGCGTCTCAGCAAACGCGCCGTCGAGCGTCGGTCCTGGCCCAAGTTCGGTGACGCCGTCCACGAAGAAGTCGGCAGCCGCCTCACCATGGTATCCACGGAAGAGATCCTCCTCGAACGCCCCAAGCCTCTCGGATCCAAAACGGAGGAGCCGAAGACTGGTGGAGACCCCTTGGCTCAATTCCAGAAAGGTGCTGTTCTGATGGTGTGTAGGACTTGTGGGAAGAAGGGTGATCACTGGACCTCAAGGTGTCCATACAAGGATCTCGCCCCGCCATCTGAGGGATTCGTGGATAAGCCTGCAACATTAGATGCTGCAGCGGCAACAGGTGGCGCAACCAAGGGAGCCTACGTGCCTCCTGGTATGAGGGCAGGGGCTGAGAGGAGTAGTGGATCTGATATGCGGCGAAGGAATGATGAGAACTCTGTGAGGGTAACCAACCTCTCTGAAGACACAAGAGAACCAGATTTGCTGGAGCTGTTCCGTCCTTTTGGTCCTGTAAGCAGAGTTTATGTTGCCATTGATCAGAAGACTAGCATGAGCAGGGGCTTTGGCTTTGTAAACTTTGTGAACAGGGAAGATGCACAAAGAGCTATCAACAAACTTAATGGGTATGGGTACGATAATCTCATACTTAGAGTTGAATGGGCGACCCCCAGGGCAAACTAG 1071 0.5341 MMTIGMPSTTSFLSTHASSQSLLLLLRHFPAKPAPRILSFYPFVSSLGVAGNDKEVNLREEIRIAAMAHQGEPAKLRWGELEEDDGEDLDFLLPPRQFIGPDDNGIKKVIEYKFDEDGNKVKITTTTRTRKLANARLSKRAVERRSWPKFGDAVHEEVGSRLTMVSTEEILLERPKPLGSKTEEPKTGGDPLAQFQKGAVLMVCRTCGKKGDHWTSRCPYKDLAPPSEGFVDKPATLDAAAATGGATKGAYVPPGMRAGAERSSGSDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGPVSRVYVAIDQKTSMSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRAN 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00484 356 CDD eIF3G 104 222 IPR024675 -
Vimu8g00484 356 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 277 343 IPR000504 GO:0003723
Vimu8g00484 356 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 275 353 IPR000504 GO:0003723
Vimu8g00484 356 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 79 352 - -
Vimu8g00484 356 SMART rrm1_1 276 349 IPR000504 GO:0003723
Vimu8g00484 356 CDD RRM_eIF3G_like 276 351 IPR034240 -
Vimu8g00484 356 Gene3D - 249 356 IPR012677 -
Vimu8g00484 356 MobiDBLite consensus disorder prediction 245 276 - -
Vimu8g00484 356 Pfam Eukaryotic translation initiation factor 3 subunit G 99 223 IPR024675 -
Vimu8g00484 356 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 75 355 IPR017334 GO:0003743|GO:0005737|GO:0005852
Vimu8g00484 356 FunFam Eukaryotic translation initiation factor 3 subunit G 239 356 - -
Vimu8g00484 356 SUPERFAMILY RNA-binding domain, RBD 260 355 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00484 Vimu-Chr8 10960744 10970221 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00484 70 354 Eukaryotic Initiation Factors Gene Family AT3G11400 67.722 2.34e-149 422