Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00468 ATTGAAGTAATGGAGAAGAATGATTTTACAAAGAAGGGTGAAATGCCAATGAATCTCAACATTGAGGACAAGCATACGATCGAATCCACTGACTCCAAAGCTCCAACAACACCTAAGCAACCTTTTTTCATTGGTGTTGCTGGTGGAACTGCATCTGGAAAAACAACTGTTTGTAATATGATAAATACCCAACTTCGTGATCAACGTGTTGTCCTCATTAGCCAAGATTCGTTTTATTACCCACTGAGTGATCAGACACTGCAAAAGGTTAATGAGTATAATTTTGATCATCCTGATGCCTTTGATACGAAGCTTTTGCTCTCAACAATGGAGAAATTAAAATGTGGACAACATGTTGATATACCAAATTATGATTCCAAAAACCATAAGAGAATTGAATCTGCACGTCAGGTTCATCCTGGAGATATCATAATCTTAGAAGGAATATTAGTTCTTCATGATTCAGGTGTTCGTAATCTTTTGAACATGAAGATCTTTGTTGACGAAGGTTCCACTTTGATGTTGCCATCTTTGGGCAAGATTCTCTTCGATATTGCCAACTCAAGGCCAGCTTTTTCTTTGATGTTGCCAACTTCAAGTAGGTTTCACTTTGATGTTGTCATCTTCGAGCAGGCTTCACTCTGGCGCTGCCAACTTCAGGCAGGCTTTGTTTTGGCGTTGCTAACTTCGAACAGCATCCTCTTCGAGCATTCTTTATGCCATTATTTGAGTCTTCTTTCATACTTGTCCTCATGTTTCTTGTCTTCTTTTTGGAATTCACCTATTGTTGAAGGAAGTGAAGATGGCTTAGGTGATGATCAAGATGGACAACTTGGCCAACTTATGAATGGAGGTACTAGGATGCTGAGTTGTTCTTATACTCAAGTACTAGAAAATCGAGCTTCTCTTTGTGAAGAAACAATGGGTCGTCGTAAAATTGAAATTGCAGCAGTGAAGGATCCTAATACGAGACAAGTCATATTTTCAAAGCATCGAACAGATTCTGATGTTCGGCTTTCACGAAGAATGCAACGTCTTGCTATTGAACGTGGAAGGAATGTTGAGAATGTGTTAGATCAAATAAAGGGAATGCATACTCTAATTCGTGATGCTAAGGCAACAAAGCATGACTTTGCCTTCTACTCAGATCGTCTAATTAGATTGGTTGTCGAACATGGATTGGGTCACCTTCCTTTTTCTGAAAAGCAGGTGATAACACCAACAGGATCTGTATATTCTGGTGTTGTTTTCTGTAGTAGGTTGTGTGGAGTTTCAGTAATTAGAAGTGGAGAAAGCATGGAAAATGCATTAAGAGCATGTTGTAAAGGAATCAAGATTGGCAAAATCCTTATCCATGGACATGGCACAAATGGTCGACAGTTAGTATATGAGAAGCTGCCAAAAGACATTGCAAGTCGTCATGTTTTGTTACTCGATCCGGTTCTGGCTACAGGTTTTATATTATATACACTTTTTACTTTCCTATAA 1488 0.3878 IEVMEKNDFTKKGEMPMNLNIEDKHTIESTDSKAPTTPKQPFFIGVAGGTASGKTTVCNMINTQLRDQRVVLISQDSFYYPLSDQTLQKVNEYNFDHPDAFDTKLLLSTMEKLKCGQHVDIPNYDSKNHKRIESARQVHPGDIIILEGILVLHDSGVRNLLNMKIFVDEGSTLMLPSLGKILFDIANSRPAFSLMLPTSSRFHFDVVIFEQASLWRCQLQAGFVLALLTSNSILFEHSLCHYLSLLSYLSSCFLSSFWNSPIVEGSEDGLGDDQDGQLGQLMNGGTRMLSCSYTQVLENRASLCEETMGRRKIEIAAVKDPNTRQVIFSKHRTDSDVRLSRRMQRLAIERGRNVENVLDQIKGMHTLIRDAKATKHDFAFYSDRLIRLVVEHGLGHLPFSEKQVITPTGSVYSGVVFCSRLCGVSVIRSGESMENALRACCKGIKIGKILIHGHGTNGRQLVYEKLPKDIASRHVLLLDPVLATGFILYTLFTFL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00468 495 Pfam Uracil phosphoribosyltransferase 360 486 - -
Vimu8g00468 495 CDD UMPK 43 168 IPR000764 -
Vimu8g00468 495 ProSiteProfiles MADS-box domain profile. 308 333 IPR002100 GO:0003677|GO:0046983
Vimu8g00468 495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 171 IPR027417 -
Vimu8g00468 495 CDD PRTases_typeI 421 485 IPR000836 -
Vimu8g00468 495 Gene3D - 2 176 IPR027417 -
Vimu8g00468 495 Gene3D - 349 491 IPR029057 -
Vimu8g00468 495 PRINTS Uridine kinase signature 71 82 - -
Vimu8g00468 495 PRINTS Uridine kinase signature 116 131 - -
Vimu8g00468 495 PRINTS Uridine kinase signature 41 58 - -
Vimu8g00468 495 Pfam Phosphoribulokinase / Uridine kinase family 43 173 IPR006083 GO:0005524|GO:0016301
Vimu8g00468 495 SUPERFAMILY PRTase-like 360 485 IPR029057 -
Vimu8g00468 495 PANTHER URIDINE KINASE 31 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00468 Vimu-Chr8 10721042 10735146 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00468 360 495 PRT Gene Family AT3G27440 78.676 1.99e-71 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00468 K00876 - gmx:100803453 233.417