Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00461 ATGTACACTTCGAGGAAGAAAATTCTCAAGGATAAGGATGCAGAGCCCACTGAACTTGAAGAGACAGTTGCACAGTATTTATTTGACTTGGAGAATACCAACCAGGATCTGAAAAGTGAGTTGAAGGATCTCTATATAAATCAAGCAATTCAAATGGATGTGGCCAATAATCGCAAGGCTGTAGTCATCTATGTGCCTTTCAGATTGAGAAAAGCATTCCACAAGATTCATCTCCGACTTGTCAGGGAGTTGGAGAAGAAATTTAGCGGGAAGGATGTTATTTTGATTACCACAAGGAGGATCTTGCGTCCACCAAAGAAGGGCTCTGCCGTTCAGCGTCCCAGGACCCGGACATTGACTGCAGTTCATGATGCCATGCTAGAGGATGTTGTATATCCTGCAGAGATTGTTGGAAAAAGGGTCAGATTTAGAATTGATGGCTCAAAAATAGTGAAGGTTTTCTTGGATCCCAAGGAGCGCAATAACACCGAGTACAAGCTGGAGTCTTTTTCTGGAGTTTACAGGAAGCTTACTGGAAAAGATGTAGTATTTGATTATCCAGGCACAGAAGCCTGA 576 0.4271 MYTSRKKILKDKDAEPTELEETVAQYLFDLENTNQDLKSELKDLYINQAIQMDVANNRKAVVIYVPFRLRKAFHKIHLRLVRELEKKFSGKDVILITTRRILRPPKKGSAVQRPRTRTLTAVHDAMLEDVVYPAEIVGKRVRFRIDGSKIVKVFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPGTEA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00461 191 PANTHER 40S RIBOSOMAL PROTEIN S7 1 190 IPR000554 GO:0003735|GO:0005840|GO:0006412
Vimu8g00461 191 Pfam Ribosomal protein S7e 7 186 IPR000554 GO:0003735|GO:0005840|GO:0006412
Vimu8g00461 191 Coils Coil 27 47 - -
Vimu8g00461 191 ProSitePatterns Ribosomal protein S7e signature. 79 92 IPR000554 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00461 Vimu-Chr8 10649711 10650720 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00461 1 187 Cytoplasmic Ribosomal Protein Gene Family AT5G16130 80.214 6.96e-113 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00461 K02993 - gmx:100500684 350.517