Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00443 ATGGGGAAAAAAGGAAGTTGGTTTTCAGCAGTGAAGAAAGTTTTCAGCCCAGATTCCAAAAAAGATAAGAAAAAACAGAAAAGTCACAAGTCAAGCAGTAACAAGGAGGAGGAAATTGCAACAGATGTTAAATTAATTGAGGCTGAGAAAGAACAAAGCAAGCATGCTGCTTCTTTGGCTTTTGCCACTGCTGTTGCAGCAGAGGCTGCTGTTGCTGCTGCTCAGGCTGCTGCAGAGGTTGTTCGTCTCACAAGTATGCCACATTACCCTGGAAAGACCATGGAAGAGATTGCAGCTGTCAAGATTCAGACTGTATTTCGTGGATATATGGCAAGAAGAGCATTGCGTGCCCTGAGAGGTTTGGTGAGGCTGAAAACCGTAGTGCAAGGGCAATCTGTTAAAAGACAAGCTTCTAGCACCCTACGAAGTATGCAAACTCTAGCAAGATTACAGTCTCAGATTCGTGAAAGGAGAATTAGAATGTCTGAAGAGAACCAAGCTCTTCAGCGCCAACTGCAGCAGAAACATGAAAAAGAACTTGAGAACCTGCGTGCTGCTGTTGGAGAAGAATGGGATGACAGTTTGCAGTCAAAGGAGCAAATTGAAGCCAAATTGTTGCACAAACAAGAAGCAGCTTTAAGAAGAGAGAGGGCTTTGGCCTATTCATTCTCACATCAGGTGCCCAGACTACCTTATATTATAACTAAAGACTTTGTCAAACAGAAAACATGGAAGGGCAGTTCAAAGTCATTAAATCCCACATTTATGGACCCAAACAATCCCCAATGGGGGTGGAGTTGGTTAGAGAGGTGGATGGCTACTCGGCCATGGGATGGCCACAGCATTGCGGATCACAATGATCATGTATCTGTGAAGAGTGCAGCAAGCAGGGCCATGACAGTAGGAGAAATTATGAAAGGTTATTCTCTCCAAGACCATAACCATGACAAAAGAGCTTCCCCTTTTGGCCAAAAGGCAAGAAGAGCACCCCCTCACATTTCACCTTCAAAGGCACCATCTGCTAGTGGCAAGGCAAGGCCATCAAGCTCAAAGGGTAGTGTGTTCTGGGGTGGAGATGAGGACTCAAGAAGCATGTTCAGCATTCAATCAGAGAGATATCGCCGACACAGCATTGCAGGATCCTCAGTGAGAGATGATGACAGTCTTGCAAGCTCCCCTGCCATTCCAAGTTATATGGCACCTACAAGCTCAGCCAAGGCCAGGTTCAAAATCCAAAGGCCTTCACCTGAGAAAGGAGGTGCTGCTGTAAGGAAACGTCTTTCTTTCTCTCCTTCAGCTGCTCCAAGAAGGCATTCTGATCCTCCTAAACCCTAA 1335 0.4569 MGKKGSWFSAVKKVFSPDSKKDKKKQKSHKSSSNKEEEIATDVKLIEAEKEQSKHAASLAFATAVAAEAAVAAAQAAAEVVRLTSMPHYPGKTMEEIAAVKIQTVFRGYMARRALRALRGLVRLKTVVQGQSVKRQASSTLRSMQTLARLQSQIRERRIRMSEENQALQRQLQQKHEKELENLRAAVGEEWDDSLQSKEQIEAKLLHKQEAALRRERALAYSFSHQVPRLPYIITKDFVKQKTWKGSSKSLNPTFMDPNNPQWGWSWLERWMATRPWDGHSIADHNDHVSVKSAASRAMTVGEIMKGYSLQDHNHDKRASPFGQKARRAPPHISPSKAPSASGKARPSSSKGSVFWGGDEDSRSMFSIQSERYRRHSIAGSSVRDDDSLASSPAIPSYMAPTSSAKARFKIQRPSPEKGGAAVRKRLSFSPSAAPRRHSDPPKP 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00443 444 ProSiteProfiles IQ motif profile. 95 123 IPR000048 GO:0005515
Vimu8g00443 444 MobiDBLite consensus disorder prediction 309 323 - -
Vimu8g00443 444 MobiDBLite consensus disorder prediction 377 444 - -
Vimu8g00443 444 Coils Coil 147 181 - -
Vimu8g00443 444 MobiDBLite consensus disorder prediction 307 361 - -
Vimu8g00443 444 Pfam IQ calmodulin-binding motif 98 116 IPR000048 GO:0005515
Vimu8g00443 444 PANTHER IQ-DOMAIN 5-RELATED 1 441 - -
Vimu8g00443 444 SMART iq_5 94 116 IPR000048 GO:0005515
Vimu8g00443 444 MobiDBLite consensus disorder prediction 17 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00443 Vimu-Chr8 10335949 10339851 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00443 1 443 IQD Protein Family AT5G03040 47.071 9.13e-127 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00443 - - gmx:100809448 586.645