Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00440 ATGGAAGGCTTTGTCGTAAAAGGGGCCATAAAATTGCCAATTGGGTTCAGGTTTTGTCCCACATATCAAGAGCTTCTCCTTCACTACCTCAAGAGAAAGGCCTTTGCTCAACGTCAACAATTACCTGCTTCAGTCATTCCAATCTGTGAGGTCTTTCAGTCTGACCCATGGCTGCTTCCAGGTGATTTGAGAGAAAAAAAGAAAAGTGAACAAGAGAGAAGTGCAGGTTCCGGTTGTTGGAAATGTGTAGGAAAAGAAAAAGAAATAAGGATGGCAGTGGCAGATTTTGCTGTGTATGTCATATTTCAGAAAAGGAAGAAGATGACAAAACCATCTTAG 339 0.4159 MEGFVVKGAIKLPIGFRFCPTYQELLLHYLKRKAFAQRQQLPASVIPICEVFQSDPWLLPGDLREKKKSEQERSAGSGCWKCVGKEKEIRMAVADFAVYVIFQKRKKMTKPS 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00440 112 Gene3D NAC domain 21 110 IPR036093 GO:0003677|GO:0006355
Vimu8g00440 112 PANTHER NAC TRANSCRIPTION FACTOR 56 12 101 - -
Vimu8g00440 112 Pfam No apical meristem (NAM) protein 13 95 IPR003441 GO:0003677|GO:0006355
Vimu8g00440 112 SUPERFAMILY NAC domain 6 91 IPR036093 GO:0003677|GO:0006355
Vimu8g00440 112 ProSiteProfiles NAC domain profile. 12 112 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00440 Vimu-Chr8 10303502 10305698 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00440 4 89 NAC Transcription Factor Family AT5G13180 42.857 2.95e-18 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu8g00440 NAM 2.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00440 - - vun:114181461 147.132