Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00434 ATGGCATCTTCTTCAGACTCTTGGATGAAGGAATATAATGAAGCTGTAAAACTTGCTGATGATATCACTGGCATGATTGCTGAACGGAGTTCGTTTCCTGCATCTGGTCCCGAAACCCAGCGACATGGATCTGCTATAAGAAGGAAGATCACAATATTAGGGACCAGGCTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCGAATGTTTCCTTGTCAATAATGCACAGAACTGAGAAGGAGATGAATCGTCGCAAGGATATGCTTGGAAACTTGAGGACCAAAGTTAACCAAATGGCTTCAACATTAAACATGTCAAGCTTTGCAAATAGGGATAGTTTGCTTGGGCCAGAAATAAAATCCGATGCAATGAGCAGAACTGTTGGCCTGGACAACAGTGGACTAGTTGGTCTTCAACGGCAAATTATGAAAGCAGAACAAGACGATGGCCTTGAGAAATTGGAGGAGACTGTAATCAGTACTAAACATATTGCGTTGGCAGTGAATGAAGAGCTGGATCTACACACCAGACTCATTGATGACTTAGACGAACATGTAGATGTTACAGATTCGCGGCTGAGGCGAGTGCAAAAGAACTTGGCAGTTTTGAACAAACGTACCAAGGGTGGTTGCTCCTGCTTGTGCATGCTTCTATCAGTGATCGGTATAGTGGTTTTGGTTGTTGTCATATGGCTGTTGATCAAATATTTGTAA 717 0.4282 MASSSDSWMKEYNEAVKLADDITGMIAERSSFPASGPETQRHGSAIRRKITILGTRLDSLQSLLSKVPANVSLSIMHRTEKEMNRRKDMLGNLRTKVNQMASTLNMSSFANRDSLLGPEIKSDAMSRTVGLDNSGLVGLQRQIMKAEQDDGLEKLEETVISTKHIALAVNEELDLHTRLIDDLDEHVDVTDSRLRRVQKNLAVLNKRTKGGCSCLCMLLSVIGIVVLVVVIWLLIKYL 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00434 238 CDD SNARE_Qc 145 202 - -
Vimu8g00434 238 PANTHER SYNTAXIN 39 225 IPR045242 -
Vimu8g00434 238 SMART tSNARE_6 137 204 IPR000727 -
Vimu8g00434 238 FunFam syntaxin-51 isoform X2 143 206 - -
Vimu8g00434 238 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 142 204 IPR000727 -
Vimu8g00434 238 Pfam SNARE domain 179 230 IPR000727 -
Vimu8g00434 238 Gene3D - 146 206 - -
Vimu8g00434 238 SUPERFAMILY SNARE fusion complex 140 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00434 Vimu-Chr8 10208667 10210405 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00434 1 238 SNARE and Associated Proteins AT1G16240 69.038 1.60e-118 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00434 K08503 - gmx:100794038 380.563