Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00419 ATGAAGAACCTCCAATCCGATTTATCCTCCGTCGTTCGCCTCAACATCGGAGGCAAGAAATTCTGCACCACCACCGACACTCTCACACAGCGCGAGCCCGATTCAATGCTTGCCGCCATGTTTAGTGGCCGCCACACTCTGTGCCAAGATTCTGACAAGGGGTATGTGTTTGTTGATAGGGATGGTAAACACTTTCGGCATATTCTCAATTGGTTAAGGGATGGTGTGGTGCCTACTCTTGAAGAATATCAGTACTCGGAATTGTTAAGGGAGGCTGAGTACTATCAGCTACTTGTAAGCACTATTATACTGTGGCCCCAAACGCTCCCAGCCGTCACTGGATTGCGGCCCCGAACGCTTCCAACCGCCGCCGGACTCCGGCCCCGAATGCTCCCAGCCGCCGCCGGACTGCGGCCCCGAACGCTCTCAGCCGCCGCCGAACTGCGCCCGCCGATGACCCGTAGCTTTCTTTTCCTTTCTTATCTTCGTAGAAATGATTCGAGAAATAACCGGAGTGCGACTCGGAACGCTCCCAGCCGCCGCCGTACTGCGCTAGCCGATGACCCTTTTGTTGACGTGGTAAATGATCTCTTTGCAGAATCGGATTGTGGCCCCGAACGCTCCCAGCCGCCGTCGGACTGCGGCCCCGAACGCTCCCAGCCGCCACCGGACTGCGGCCGCGAATGCTTCCTACCGCTGCCGGACTGCGGCTCGAACGCTCCCAACTGCCATCGGACTACGGCCCCGAACGCTCTCAGCCGCCGTCGGATTGCACCCGCCGATGACCCAACCGGACTGCGGCCCCGAACGCTCCCATCTGCTGCCGGACTGTGCCCGTTGATGACCCGTAGCTTTCTTTTCCTTTCTTATCTTCTTACATATGATTCGAGAAATGTCCTTTTATTCCTCGAGTGCCTGATCCCAATTACTGTTGCGAAAGGAAAAATTAGGGACATAACAAAGGGTCAAACAGTAGGTGATAAGAGGGGTTGGGGGCTTATAGATGGAATACATGCTGTCCTCAATGAAAAGAAGGAAGTTGATGAGTTCCGTACAGAGTTGACACGTACAGACATAATCAAGTGTATACAATCTGAGAAAGTAAGGTTTCGAGGGGTTAATCTTTCTGGACTTGACCTCTCTAAACTGGATTTATCATACGTGGATTTCAGCTATGCCCTTCTTAAAAATGTGTTCTTTTCACGAGCAAACCTGCAATGTGCAAAGTTTCGAGATGTTGAAGCCGAGGCCTCCATTTTTCACAATGCAACTTTGCGTGAGCAGCGGTTGCGACGTGTTAGACAACGTTGCCAGTTACGCACAGCGGCGACAACGCGTGATTATATTTTGAGCGGCAGCGACACCGTGAAGAATGTGACCCTGCGGCAGGTGGTGGGTGGGAGTGTGGTGGGAGAGTTGATCGTGGCGGGACCGGTGATTGTAATCGCAGCGTCGTTCACCAATGTGTCTTATGAACGATTATCGTTAGAAGAAGAGGAACAGGTTCAGATATCTGGTGGATGGTTGGGTGTGTGA 1536 0.528 MKNLQSDLSSVVRLNIGGKKFCTTTDTLTQREPDSMLAAMFSGRHTLCQDSDKGYVFVDRDGKHFRHILNWLRDGVVPTLEEYQYSELLREAEYYQLLVSTIILWPQTLPAVTGLRPRTLPTAAGLRPRMLPAAAGLRPRTLSAAAELRPPMTRSFLFLSYLRRNDSRNNRSATRNAPSRRRTALADDPFVDVVNDLFAESDCGPERSQPPSDCGPERSQPPPDCGRECFLPLPDCGSNAPNCHRTTAPNALSRRRIAPADDPTGLRPRTLPSAAGLCPLMTRSFLFLSYLLTYDSRNVLLFLECLIPITVAKGKIRDITKGQTVGDKRGWGLIDGIHAVLNEKKEVDEFRTELTRTDIIKCIQSEKVRFRGVNLSGLDLSKLDLSYVDFSYALLKNVFFSRANLQCAKFRDVEAEASIFHNATLREQRLRRVRQRCQLRTAATTRDYILSGSDTVKNVTLRQVVGGSVVGELIVAGPVIVIAASFTNVSYERLSLEEEEQVQISGGWLGV 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00419 511 SUPERFAMILY POZ domain 10 100 IPR011333 -
Vimu8g00419 511 SMART BTB_4 10 110 IPR000210 GO:0005515
Vimu8g00419 511 SUPERFAMILY Pentapeptide repeat-like 354 451 - -
Vimu8g00419 511 MobiDBLite consensus disorder prediction 201 221 - -
Vimu8g00419 511 Pfam Pentapeptide repeats (9 copies) 367 432 IPR001646 -
Vimu8g00419 511 PANTHER UNCHARACTERIZED 331 443 - -
Vimu8g00419 511 Pfam BTB/POZ domain 12 97 IPR003131 GO:0051260
Vimu8g00419 511 Gene3D Potassium Channel Kv1.1; Chain A 2 107 IPR011333 -
Vimu8g00419 511 SUPERFAMILY AF0104/ALDC/Ptd012-like 463 502 - -
Vimu8g00419 511 Gene3D - 337 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00419 Vimu-Chr8 9814319 9824081 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00419 463 501 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 61.538 3.46e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00419 K21919 - gmx:100806501 192.971