Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00413 ATGGGAGAGGGCTTCAACGGTGCACAGCGACAGAGCGAGAGAGATAACTCAGACAAATCGAGAGAAAGAGCAATGCTTGACGAGAGAAAGATGAGCAACCCACAGAGAGTGATGATAGAGTTCGACTTACCACCCAAAACGAAGACAATTCACGGTTCGCACAACACAACAATGGGAGAGGGCTTCAATGGTGCACAACGACAGAGAGACAAAACTCAGACAAAGCGAGAGAATGAGCGACCCAAAGAGAGTGATGACAAAAAGAGCACTTTTGACACTCTTATAAATCCAGTTGGTTCTCACATTATTCTCCAAGAAATCATGAAGCATTTGGAATTCCATGCTGTTTTGCTTTTGTTAATCTTTGTGGGAATTGGCTTAGCTTATCCCACAGAAGATCAGTTAAAGGATAGGATTACCAAGCTGCCAGGACAGCCAGAGAACGTGCTTTTTTCTCAGTACTCGGGGTATGTGACTGTGAATGAGGAAGCTGGAAGAGCTTTGTTTTATTGGCTGGTAGAGACAGAAGAAGATAGTAGTTCAAAGCCACTTGTTTTGTGGCTTAATGGTGGCCCTGGATGCTCCTCTATTGCTTATGGAGCAGCTGAAGAAATTGGTCCTTTTCGACTCAATCCTGATGGCAAAACACTTTACTCCAATTCTTATGCTTGGAACAAATTGGCAAATATACTTTTCCTCGATTCTCCTGCTGGTGTTGGATTTTCATATTCTAACACCACATCAGATCTGTATACAGCAGGTGACCAGAAAACAGCTGAAGATGCATATACGTTCCTTGTTAATTGGCTTGAAAGGTTTCCTCAGTATAAGCATAGAGATTTCTACATTGCCGGAGAAAGTTATGCAGGTCACTATGTTCCCCAGTTGTCTCAAGTCATTTATCGCAGAAATAAAGGAATCGAGAATCCAGATATAAATTTCAAGGGGTTTATGGTTGGAAATGCTGTGATAGATGATTACTATGACTACATTGGAACATTTGAGTACTGGTGGGTCAATGGTTTGATTTCAGATGACACATATAAAATGCTGAGAATTGTGTGTGAGTTTGATTCTTCTGAGCATCCACCAGAGAAATGTGCCATAGCTTTAGCACTTGCACGTATTGAGCATGGAAACATTGATCCATATAGCATTTATACTCCTGTGTGCAATGCTACAGCTGCAACACTCAAACCCCATTTAAGGGGTCCCTTAGGAAGACTGTATGGAGCATTAGCATTCGATCCCTGCACTTCGACGTACTCTGAGGTGTATTTCAATCGTCCAGACGTTCAAAAGGCTCTTCATGCGAACGTAACAAGGATTCCTTATTCATGGACAGCATGCAATTATATTGTTGTGAGGAACTGGGGTGATTCTCCCCTTTCTATGCTTCCAATATATCAAGAAATTCTTGATGCCGGCCTCAGGATATGGGTGTACAGTGGAAACACTGATTCAGTGGTGCCTGTAACTGCGAGTCGGTATTCAATTGCTTCATTGAACCTACCTACCATCCTCAACTGGTACCCTTGGAATGATAATGGCGAGGTTGGTGGTTGGAGTCAAGTTTACAAGGGACTTACATTCGTTGCAGTAAGAGGGGCAGGGCATGAGGTTCCACTTCATAGACCTCGTCAAGCTTTTACCCTTTTTAAATCATTCCTCGAGAACAAGAACTTGCCATTTTCAACTGTTACGACTCAATCACTGAACCATAGACTTAGATCAGTTAGGCCCAAAAGAAAGATCGTTATGCCATCTTCCATGCACCACTTTTCTAGCTAG 1791 0.426 MGEGFNGAQRQSERDNSDKSRERAMLDERKMSNPQRVMIEFDLPPKTKTIHGSHNTTMGEGFNGAQRQRDKTQTKRENERPKESDDKKSTFDTLINPVGSHIILQEIMKHLEFHAVLLLLIFVGIGLAYPTEDQLKDRITKLPGQPENVLFSQYSGYVTVNEEAGRALFYWLVETEEDSSSKPLVLWLNGGPGCSSIAYGAAEEIGPFRLNPDGKTLYSNSYAWNKLANILFLDSPAGVGFSYSNTTSDLYTAGDQKTAEDAYTFLVNWLERFPQYKHRDFYIAGESYAGHYVPQLSQVIYRRNKGIENPDINFKGFMVGNAVIDDYYDYIGTFEYWWVNGLISDDTYKMLRIVCEFDSSEHPPEKCAIALALARIEHGNIDPYSIYTPVCNATAATLKPHLRGPLGRLYGALAFDPCTSTYSEVYFNRPDVQKALHANVTRIPYSWTACNYIVVRNWGDSPLSMLPIYQEILDAGLRIWVYSGNTDSVVPVTASRYSIASLNLPTILNWYPWNDNGEVGGWSQVYKGLTFVAVRGAGHEVPLHRPRQAFTLFKSFLENKNLPFSTVTTQSLNHRLRSVRPKRKIVMPSSMHHFSS 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00413 596 MobiDBLite consensus disorder prediction 69 90 - -
Vimu8g00413 596 FunFam Carboxypeptidase 416 562 - -
Vimu8g00413 596 MobiDBLite consensus disorder prediction 49 68 - -
Vimu8g00413 596 FunFam Carboxypeptidase 133 393 - -
Vimu8g00413 596 MobiDBLite consensus disorder prediction 1 91 - -
Vimu8g00413 596 Gene3D alpha/beta hydrolase 134 393 IPR029058 -
Vimu8g00413 596 MobiDBLite consensus disorder prediction 12 35 - -
Vimu8g00413 596 ProSitePatterns Serine carboxypeptidases, serine active site. 283 290 IPR018202 GO:0004185
Vimu8g00413 596 FunFam Carboxypeptidase 465 559 - -
Vimu8g00413 596 Pfam Serine carboxypeptidase 143 559 IPR001563 GO:0004185|GO:0006508
Vimu8g00413 596 ProSitePatterns Serine carboxypeptidases, histidine active site. 529 546 IPR033124 GO:0004185
Vimu8g00413 596 SUPERFAMILY alpha/beta-Hydrolases 136 562 IPR029058 -
Vimu8g00413 596 PRINTS Carboxypeptidase C serine protease (S10) family signature 269 294 IPR001563 GO:0004185|GO:0006508
Vimu8g00413 596 PRINTS Carboxypeptidase C serine protease (S10) family signature 220 232 IPR001563 GO:0004185|GO:0006508
Vimu8g00413 596 PRINTS Carboxypeptidase C serine protease (S10) family signature 233 243 IPR001563 GO:0004185|GO:0006508
Vimu8g00413 596 PRINTS Carboxypeptidase C serine protease (S10) family signature 529 542 IPR001563 GO:0004185|GO:0006508
Vimu8g00413 596 Gene3D - 465 558 - -
Vimu8g00413 596 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 138 546 IPR001563 GO:0004185|GO:0006508
Vimu8g00413 596 Gene3D - 418 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00413 Vimu-Chr8 9706653 9712120 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00413 423 562 Calmodulin-binding Proteins AT2G22960 28.369 4.51e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00413 K16297 - gmx:100796815 755.747