Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00412 ATGAAACATTTAGAATTCCATGCTGTTTTGCTTTTGTCAATCTTTGTGGGAATTGACTTAGCTTATCCCACAGAGGATCAGTTAAAAGATAGGATTACCAAGCTGCCAGGACAGCCAGAGAATGTGCTTTTTTCTCAGTACTCGGGGTATGTGACTGTGAATGAGGAAGCTGGAAGAGCTTTGTTTTATTGGCTGGTAGAGACAGAAGAAGATAGTAGTTCAAAGCCACTTGTTTTGTGGCTTAATGGTGGCCCTGGATGCTCCTCTATTGCTTATGGAGCAGCTGAAGAAATTGGTCCTTTTCGAATCAATCCTGATGGCAAATCACTTTACTCAAATCCTTATGCTTGGAACAAATGTGAGGCAGTGTTTTTCTCTTTTTGGATTTTTGATCTTTTCCTAGAACATGTGTTAATTTTCGTTTCTCTTCCTGCAGTAGCAAATATACTCTTCCTCGATTCTCCTGCTGGTGTTGGATTTTCATATTCCAACACCACATCAGATCTGTATACAGCAGGTGACCAGAAAACAGCTGAAGATGCATACACGTTCCTTGTTAATTGGCTTGAAAGGTTTCCTCAGTACAAACATAGAGATTTCTACATTGCCGGAGAAAGTTATGCAGGTCACTATGTTCCTCAGTTGTCTCAAGTCATTTATCGCAAAAATAAAGGAATGGAGAACCCAGATATAAATTTCAAGGGGTTTATGGTTGGAAATGCTGTGATTGATGATTACCATGACTACATTGGAACATTTGAGTACTGGTGGGTCAATGGTTTGATTTCAGATGACACATATAAACTGCTGAGAATTCATCCACCAGAGAAATGTGCGGAAGCTTTTGAAATTGCAACTGTTGAGCAGGGGAACATTGATCCATATAGCATTTATACTCCTGTGTGCAATGCTACAGCTGCTGCAACACTCAAACCCCGTTTAAGGGGTCGCTTAGGAAGACTGTATGGAGCATACGATCCGTGCACTTCGACGTACTCTGAGGTGTATTTCAATCTTCCAGAAGTTCAGAAGGCTCTTCATGCGAACCTAACAGGGATTCCTTATTCATGGACAGGATGCAATGATATTGTTGGGAACAATTGGGGTGATTCTCCCCTTTCTATGCTTCCAATATATCAAGAAATTCTTGATGCTGGCCTCAGGATATGGGTCTATAGTGGAGACACTGATTCAGTGGTGCCTCTAACTGCGAGTCGGTATTCAATTGCTTCATTGAACCTGCCTACCATCCTCAACTGGTACCCTTGGAATGATAATGGCGAGGTTGGTGGATGGAGTCAAGTTTACAAGGGACTGACATTGGTTGCAGTAAGAGGGGCAGGGCATGAGGTTCCACTTTTTAGACCTCGTCAAGCTTTTACCCTTTTCGAATCATTCCTCGAGAACAGGAACCTATCATTTTCAACTGTTACGACTCAACCACTGAACCATAGACTTAGATCAGTTAGGCCCAAAAGAAAGATCACTATGTCATCTTCCATGCACCACTTTCCGAGCTAG 1521 0.4208 MKHLEFHAVLLLSIFVGIDLAYPTEDQLKDRITKLPGQPENVLFSQYSGYVTVNEEAGRALFYWLVETEEDSSSKPLVLWLNGGPGCSSIAYGAAEEIGPFRINPDGKSLYSNPYAWNKCEAVFFSFWIFDLFLEHVLIFVSLPAVANILFLDSPAGVGFSYSNTTSDLYTAGDQKTAEDAYTFLVNWLERFPQYKHRDFYIAGESYAGHYVPQLSQVIYRKNKGMENPDINFKGFMVGNAVIDDYHDYIGTFEYWWVNGLISDDTYKLLRIHPPEKCAEAFEIATVEQGNIDPYSIYTPVCNATAAATLKPRLRGRLGRLYGAYDPCTSTYSEVYFNLPEVQKALHANLTGIPYSWTGCNDIVGNNWGDSPLSMLPIYQEILDAGLRIWVYSGDTDSVVPLTASRYSIASLNLPTILNWYPWNDNGEVGGWSQVYKGLTLVAVRGAGHEVPLFRPRQAFTLFESFLENRNLSFSTVTTQPLNHRLRSVRPKRKITMSSSMHHFPS 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00412 506 ProSitePatterns Serine carboxypeptidases, histidine active site. 439 456 IPR033124 GO:0004185
Vimu8g00412 506 FunFam Carboxypeptidase 27 304 - -
Vimu8g00412 506 Pfam Serine carboxypeptidase 36 125 IPR001563 GO:0004185|GO:0006508
Vimu8g00412 506 Pfam Serine carboxypeptidase 146 469 IPR001563 GO:0004185|GO:0006508
Vimu8g00412 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 439 452 IPR001563 GO:0004185|GO:0006508
Vimu8g00412 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 188 213 IPR001563 GO:0004185|GO:0006508
Vimu8g00412 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Vimu8g00412 506 FunFam Carboxypeptidase 375 469 - -
Vimu8g00412 506 Gene3D - 328 364 - -
Vimu8g00412 506 ProSitePatterns Serine carboxypeptidases, serine active site. 202 209 IPR018202 GO:0004185
Vimu8g00412 506 FunFam Carboxypeptidase 325 472 - -
Vimu8g00412 506 Gene3D - 375 469 - -
Vimu8g00412 506 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 31 456 IPR001563 GO:0004185|GO:0006508
Vimu8g00412 506 Gene3D alpha/beta hydrolase 27 304 IPR029058 -
Vimu8g00412 506 SUPERFAMILY alpha/beta-Hydrolases 29 472 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00412 Vimu-Chr8 9694209 9700507 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00412 333 472 Calmodulin-binding Proteins AT2G22960 29.078 5.73e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00412 K16297 - gmx:100796815 736.487