Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00392 ATGCAGGAAGCTCAGAGGAGACATCAATACTATGATGAACTGGCTTCTCAGGGTCGTTTCGCTTCAGCTCTTTTAGTTGTAAGGGAACATCTTCCTTCTGGAAAGGCATGTCTGAGATTAAATATCGATGCGACAAGATTAGGAAACATTGCACGATTTGTAAATCATTCATGTGATGGTGGTAATTTAAGCACAAAGCTAGTTAGAAGTTCAGGAGCTTTGTTCCCCCGTCTATGCTTCTTTGCTTCAAAAGATATACTAGTAGATGAAGAGCTTACTTTTAGCTATGGAGAAATCAGGAAAAGGTCAAAGGGGTTGCCATGCTTTTGCAATAGCCCTTCATGCGTTGGAACGTTGCCCTCTGAAGATACATAA 375 0.4107 MQEAQRRHQYYDELASQGRFASALLVVREHLPSGKACLRLNIDATRLGNIARFVNHSCDGGNLSTKLVRSSGALFPRLCFFASKDILVDEELTFSYGEIRKRSKGLPCFCNSPSCVGTLPSEDT 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00392 124 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUV39H 2 119 - -
Vimu8g00392 124 ProSiteProfiles SET domain profile. 5 97 IPR001214 GO:0005515
Vimu8g00392 124 ProSiteProfiles Post-SET domain profile. 104 120 IPR003616 -
Vimu8g00392 124 Pfam SET domain 39 97 IPR001214 GO:0005515
Vimu8g00392 124 Gene3D SET domain 1 124 IPR046341 -
Vimu8g00392 124 SMART set_7 6 103 IPR001214 GO:0005515
Vimu8g00392 124 SUPERFAMILY SET domain 2 117 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00392 Vimu-Chr8 9403994 9407214 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00392 38 119 C2H2 Transcription Factor Family AT2G23740 36.047 1.61e-09 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vimu8g00392 SET 6.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00392 K11433 - gmx:100786871 231.491