Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00390 ATGCCAAAAACTCCTCTGTCTGTAATGGGAAATAGGGTTCCTCTCTCGGTGCTTCTGGTTTTGGTAACAGATTTACTTTCAATCTTTCACTCGGAGCAACTGCAATCCTCTCACTCGCAGACCTTCCTAAGAATTCAACGGCAATTGAACTTTCCAGCTGTTTTAAGCAGCTGGAACAACAACACAGACTTTTGCAGCACAGATTCAACATCTTCTCTCACTGTTGTTTGCTATGATGGCACCATAACCCAGCTGCACATTGTTGGTGAAACAACAGCTCCACTTCTTGCTAAAAATTTCTCAATAAATTCCTTTTTCACAACACTGGTTAGGCTTCCCAGTCTCAAAGTCCTCACTTTGGTTTCTCTTGGCATATGGGGTCCATTGCCTGGTAAGATTTCTCAGTTGTCATCACTGGAAATTTTCAATGCCAGTTCAAATTTCTTATATGGTTCCATCCCTCCAGAATTATCCTTACTGTCACATCTCCAAACACTCATTCTAGATTACAACATGTTTTCTGGCCATCTTCCTGAATGGTTTGATTCCTTTCCAGCCTTAACTGTGCTAAGTTTGAAACACAACTTGTTCAATGGTTCACTTCCGGATTCACTGAGTAGCTTGGAGAATATGAGAATTCTTTCACTTTCTCATAACCACTTTTATGGACCAGTGCCTGATTTGCACCGTTTGACGAATCTCCAAGTGCTGGAATTGGATGATAATGGTTTTGGACCCCGGTTTCCCCTGCTTGGTGACAAACTAGTTACTCTAGTACTAAGAAACAACAAGTTCAGGTCTAGCATCCCTGATGAAATCAGCTCATGTTATCAACTTGAGAGACTTGACATCTCAGCAAACACATTTGTTGGACCATTTCAACTAGCACTGATGTCACTCCCTTCTATTACTTATCTCAACATTTCTGGGAACAAATTAACAGGAATGCTTTTGGAGAATCTGTCTTGCAATTCTGGTCTTCAAGCAGTGGATTTGTCCTCAAATCTTTTGACTGGGATCTTACCAAAATGTTTAATGTCAAATGCCAATGATAGGACTGTCTTGTATGCCAGAAATTGTCTAGAAGAGACAAATCAAAATCAGCATGCACTACCCTTTTGCCACACTGAAGCCATAGCTGTGGGAGTAGTACCTGAGGGAAAGAAGCACAAACGAGTATCTAAGGCAGTTCTCTCCCTTGGGATAGTATGTGGAACTTTTGGAGGAGTAGCAATTATTGCACTGCTTTTTTTTATTATCAGAAGAGGAAATGTCAAAAGAAAAACCAAGAATCCTCCTCCAACAAAATTAATATCCGAGAACGCAGCTTCTGGATATACCTCTAAGTTACTCTCTGATGCAAGGTATATATCTCAAACAATGAAGTTCGGAACAGTTGATCTGCCTCCTTATCGAGCTTTCTCACTAGATGAGATTGTAGCAGCTACAAACAACTTTGACTCGGCTTGTTTTATGGGTGAAGGTTCTCAGGGAAAGATGCACAGAGGTCAACTAAAGGATGGTTTACTTGTTGCCATTAGAAGTGTAAAAATCACCAAAAGCTTCAGCACTCAAGATTTTGTGCATAACATAGAGCAGATATTCAAATACAGGCATCGTCATTTAGTCAGTGTTCTTGGACACTGCTTTGAATGTTATTTGGATGATTCAAGTGTCAGCAGCATATTTATTGTGTTTGAGTATGTTCCTAACGGCACACTCAAGAGCTGGATTTCAGATAGACACTACAGAAAATCACTGACATGGATGCAACGCATAGAAGCTGCTATTGGAGTAGCAAAAGGCATCCAATATTTGCATGCAGGAATTGTACCTGGTGTATATTCAAACAATCTAAAAATCACAGATGTTTTACTTGACCAAAATTTTGTTGCAAAAATCAAAATTTATGACCTGCCTTTGTTATCTCTCATGAGGAAGGTTGGACAAGGTAATCCTTCTAGAGAATTCAAAAGTCCTAGCACTAATAAAAATGTAAAACAGGAAGACGAGTCTGATGTATATGACTTTGGAGTAATCCTGCTGGAACTCATTCTAGGAAGGACAATAAAATCAAGGAATGTGGACACTTTAAAGGATCTGTTGCAAGCAAGCATAACAGCTGATGATGAAGCTAGGAGGAGCATTATAGATCCAGCAGTTCGCAAGGTGTGCTTAGATCAATCGTTGAAGACAATGATGGAAATTTGTGTGAGGTGTCTAGTCAAAGAACCAGCAGAGAGACCCTCTAATGAGGATGTTTTGTGGAATCTGCAATTTGCAGCTCAAGTCCAAGATGCATGG 2304 0.4006 MPKTPLSVMGNRVPLSVLLVLVTDLLSIFHSEQLQSSHSQTFLRIQRQLNFPAVLSSWNNNTDFCSTDSTSSLTVVCYDGTITQLHIVGETTAPLLAKNFSINSFFTTLVRLPSLKVLTLVSLGIWGPLPGKISQLSSLEIFNASSNFLYGSIPPELSLLSHLQTLILDYNMFSGHLPEWFDSFPALTVLSLKHNLFNGSLPDSLSSLENMRILSLSHNHFYGPVPDLHRLTNLQVLELDDNGFGPRFPLLGDKLVTLVLRNNKFRSSIPDEISSCYQLERLDISANTFVGPFQLALMSLPSITYLNISGNKLTGMLLENLSCNSGLQAVDLSSNLLTGILPKCLMSNANDRTVLYARNCLEETNQNQHALPFCHTEAIAVGVVPEGKKHKRVSKAVLSLGIVCGTFGGVAIIALLFFIIRRGNVKRKTKNPPPTKLISENAASGYTSKLLSDARYISQTMKFGTVDLPPYRAFSLDEIVAATNNFDSACFMGEGSQGKMHRGQLKDGLLVAIRSVKITKSFSTQDFVHNIEQIFKYRHRHLVSVLGHCFECYLDDSSVSSIFIVFEYVPNGTLKSWISDRHYRKSLTWMQRIEAAIGVAKGIQYLHAGIVPGVYSNNLKITDVLLDQNFVAKIKIYDLPLLSLMRKVGQGNPSREFKSPSTNKNVKQEDESDVYDFGVILLELILGRTIKSRNVDTLKDLLQASITADDEARRSIIDPAVRKVCLDQSLKTMMEICVRCLVKEPAERPSNEDVLWNLQFAAQVQDAW 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00390 768 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 35 253 - -
Vimu8g00390 768 SUPERFAMILY Protein kinase-like (PK-like) 466 760 IPR011009 -
Vimu8g00390 768 Gene3D Ribonuclease Inhibitor 250 368 IPR032675 -
Vimu8g00390 768 PANTHER UNNAMED PRODUCT 97 688 - -
Vimu8g00390 768 Gene3D Ribonuclease Inhibitor 35 249 IPR032675 -
Vimu8g00390 768 Pfam Leucine rich repeat 254 313 IPR001611 GO:0005515
Vimu8g00390 768 Pfam Leucine rich repeat 161 221 IPR001611 GO:0005515
Vimu8g00390 768 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 569 768 - -
Vimu8g00390 768 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 459 568 - -
Vimu8g00390 768 Gene3D Transferase(Phosphotransferase) domain 1 569 767 - -
Vimu8g00390 768 Pfam Protein tyrosine and serine/threonine kinase 492 755 IPR001245 GO:0004672|GO:0006468
Vimu8g00390 768 SUPERFAMILY L domain-like 109 361 - -
Vimu8g00390 768 Gene3D Phosphorylase Kinase; domain 1 449 568 - -
Vimu8g00390 768 ProSiteProfiles Protein kinase domain profile. 486 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00390 Vimu-Chr8 9381933 9386715 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00390 51 768 Miscellaneous Gene Families AT3G03770 62.379 0.0 866
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Vimu8g00390 PK_Tyr_Ser-Thr 2.3e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00390 - - gmx:100813207 1300.03