Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00388 ATGGGTAATGATGGAGATGACAGCGGTGGATCAGGAAGCAAACGTAAAGGTGGTGTTTTGAGGCGTGGCATGGCAACACAAACTCAAGATGAAGCAATGGTGGGATCTTCACCTGCACCTGCAACACCATGTGGGGCTTGCAAGTTCTTGAGGAGGAAGTGCATTGGAGGCTGCATCTTTGCACCCCACTTTGCCACAGACCAAGGTGCAGCCAAGTTTGCAGCTGTCCACAAGGTATTTGGCGCTAGCAATGTCTCAAAGCTCTTGTCTAACATTCCGGCCAACCGCCGCCAAGAAGCAGCAACAACCATCTCTTATGAGGCTCAGGCAAGGCTCTCTGATCCCGTTTATGGTTGTGTCTCAACCATCCTTGCTCTCCAACAACAGGTAGCATCTCTACAAGCAGAGTTAGCTATGTTGCAAACTCAGGTGATGAATAGTAAGTTTGCCTATGCAAGTGCTCTTCACAGCACACAACTACAGCAACCAAACATGAATGCAGCAGCACTACAACCAGCATATTCTAACAACTCATGTGCTTCCACCAACCTTATGAACTTGAGCAGCTTCAACAATAACCCTGCTGCTTTTGACCTTGCAATGGACACAGCACCCTCATCAAACACTTTAGAGCCTCTTCAACTCACAAGGCTGTCCAAATGTGAAGAAGAAGATGAAGAAGAAAGCAGGACTCACCAAGCCTTCAACCACCATTAA 717 0.477 MGNDGDDSGGSGSKRKGGVLRRGMATQTQDEAMVGSSPAPATPCGACKFLRRKCIGGCIFAPHFATDQGAAKFAAVHKVFGASNVSKLLSNIPANRRQEAATTISYEAQARLSDPVYGCVSTILALQQQVASLQAELAMLQTQVMNSKFAYASALHSTQLQQPNMNAAALQPAYSNNSCASTNLMNLSSFNNNPAAFDLAMDTAPSSNTLEPLQLTRLSKCEEEDEEESRTHQAFNHH 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00388 238 MobiDBLite consensus disorder prediction 1 21 - -
Vimu8g00388 238 Pfam Lateral organ boundaries (LOB) domain 43 141 IPR004883 -
Vimu8g00388 238 Coils Coil 123 143 - -
Vimu8g00388 238 ProSiteProfiles LOB domain profile. 42 144 IPR004883 -
Vimu8g00388 238 MobiDBLite consensus disorder prediction 219 238 - -
Vimu8g00388 238 PANTHER LOB DOMAIN CONTAINING PROTEIN 42 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00388 Vimu-Chr8 9369548 9372509 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00388 42 229 AS2 family AT3G03760 58.883 3.65e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu8g00388 LOB 6.2e-38 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g00388 8 9369548 9372509 Vimu8g00388 8 9369548 9372509 ECH