Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00376 ATGTTCCCTTACAGTTCCACCCCCTACCCTTCCTTCCCTTCATCATCTTCTTCCTTCCATCCTTTTCCTTTCCTCAACCTTGAGAATGCTTCTGCAAGCAACACCCTTCTTCACGATCCACTTTCTGTGCCTTACTTACCAACTCATCACAACCCTCCAAACATCCAAGAGGCACTGAGCAATTTGCCAGTCACAGATCATAACTGTGGTGGTGGAGGTTCTGCAATGACCAAACCTGACCCAAGTGGTGCTGGTGGTGGTGGTGGTTGTGGTGGTGCTCCTCACTATGGCCTCTCTTGTTTCCTCACAAAGAAGCCAGTTAAGAAAGACAGGCACAGCAAGATTTACACCTCTCAGGGGTTGAGGGACCGGAGGGTGAGGTTATCCATTGAGATTGCTCGCAAGTTCTTTGATCTTCAAGACATGCTAGGGTTTGACAAAGCCAGCAACACCCTTGAGTGGCTCTTCAACAAGTCCAAGAGAGCAATTAAGGATCTGGCAAGGAGCAAGAACAGCACCAACAGTGAAGAAGGAGCCAAGAGCTTCTCTTCTTCATCTGAGTGTGATGATGACTGTGAAGTGGTTTCGGAGATCAAGCAGAAGCAACAACTCATCTCTGCTGATGCTGCTGCTGCTGTTGCTCCAAACAACCTACAACAAGGGTTAGATTCAAGCGATAACAAGTCACCGACATTTCTGGCTGCAAGAGAGAGGATGAAGTTGAAAAGGGCACAGAAGGAACCTGCAAAGATGAAGGAGTCAAGGGAGAAAGCAAGAGCAAGAGCAAGGGAAAGGACTAGTAACAAGATTATGTGCAATGTTAATTCCAACACAGGGAGGGTGCAACAAGACCTGAAGAAAAAATGCCCTGCAATTGAAAATAGCCACTCTCACCACCTTGTTGGAAGTGAAGCACCTAGAGATGATTTCAACGTTATTGAGGAATCAATTGTGATCAAGAGAAAGTTGAAGCCATCATTGATGTCCTCTTCTCATCACCATCACCAAAACCTTATGATCCCTAAGGAACCACCATGTTTCAACAACAACAACATTGAGTACCACCACCCTTTCTCCAATTTATCTCCAAATTGGGATGCTAATGGATCCACTGGCCGCTCCAACTTCTGTGCCATAGCTAGCATGAATCTATCCACAGGGCTTCAAATCTTTGGAAAGTCTTGGGAGGAGTGCACCAATCCACGTTTACACTAG 1215 0.4626 MFPYSSTPYPSFPSSSSSFHPFPFLNLENASASNTLLHDPLSVPYLPTHHNPPNIQEALSNLPVTDHNCGGGGSAMTKPDPSGAGGGGGCGGAPHYGLSCFLTKKPVKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKRAIKDLARSKNSTNSEEGAKSFSSSSECDDDCEVVSEIKQKQQLISADAAAAVAPNNLQQGLDSSDNKSPTFLAARERMKLKRAQKEPAKMKESREKARARARERTSNKIMCNVNSNTGRVQQDLKKKCPAIENSHSHHLVGSEAPRDDFNVIEESIVIKRKLKPSLMSSSHHHHQNLMIPKEPPCFNNNNIEYHHPFSNLSPNWDANGSTGRSNFCAIASMNLSTGLQIFGKSWEECTNPRLH 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00376 404 ProSiteProfiles R domain profile. 252 269 IPR017888 -
Vimu8g00376 404 MobiDBLite consensus disorder prediction 241 265 - -
Vimu8g00376 404 Pfam TCP family transcription factor 107 270 IPR017887 -
Vimu8g00376 404 ProSiteProfiles TCP domain profile. 108 166 IPR017887 -
Vimu8g00376 404 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 84 353 IPR005333 GO:0003700
Vimu8g00376 404 MobiDBLite consensus disorder prediction 167 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00376 Vimu-Chr8 9250853 9252184 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00376 104 177 TCP Transcription Factor Family AT1G67260 71.622 1.22e-29 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vimu8g00376 TCP 4.3e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00376 - - gmx:100801549 601.282