Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00352 ATGATTGGTGAAGGTGAAAAGCTAGTGAGAGCCCTTTTTGGAGTTGCCAGTTGCCGTCAGCCTGCTGTAATTTTTGTTGATGAAATAGATTCTCTCCTGTCTCAGCCAATAAAAGCAACGTGGATTTATTGCCGTAGTAGTTTCTCTGACATTATGAGCCATAGCAGAATCGTCTATGAGGAACGTAAATCAGACGGTGAGCATGAATCCAGTAGACGGCTAAAGACACAGTTTCTCATTGAAATGGAAGGCTTTGACAGTGGGGCAACGAATCGTCCCCAGGAGCTTGATGAAGCAGCACGAAGGAGACTTACTAAAAGGCTTTATATTCCTCTACCATCCTCAGGTTATTCAGGATCAGACATGAAAAACTTAGTGAAGGATGCTTCTATGGGACCCCTAAGAGAGGCTTTAAGACAGGGCATAGAAATTACAAAGTTGAAAAAGGAGGATATGCGAGGAGTAACTCTTCAGGACTTCGAGAACTCCCTCAGAGAGGTGAGGCCTTCTGTTTCCCCAAATGAACTTGGCACGTATGATCAATGGAACAAGCAATTCGGAAGCTTATCATTAGAAGGTGAAAAAGTGAAGGAAAGAAGAGTCACAGCTACCGCCAGACGGTGTACTTTCACAAAGAACTCTCTGCCAAACGCTCAAGCAACACCGCTGAGGGGTAAGTTGAAGTGCCGACCATACCGCCGGGCGGTGGAACCTTCAGAAGAACTCTCTGGACAACGGGTGGCAGCACTGAGAGGTGATGTTAGGTGCCGTACATATCGCCGGGCGGTGAACCCATCGCCGAGAGGACACAAAAACACTCTCTTCACTCCTTGGAGGCGGATTTTGGATGCGGAAGCTCCAATCTATCAATTCTAG 876 0.468 MIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQPIKATWIYCRSSFSDIMSHSRIVYEERKSDGEHESSRRLKTQFLIEMEGFDSGATNRPQELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKDASMGPLREALRQGIEITKLKKEDMRGVTLQDFENSLREVRPSVSPNELGTYDQWNKQFGSLSLEGEKVKERRVTATARRCTFTKNSLPNAQATPLRGKLKCRPYRRAVEPSEELSGQRVAALRGDVRCRTYRRAVNPSPRGHKNTLFTPWRRILDAEAPIYQF 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00352 291 Gene3D - 2 112 IPR027417 -
Vimu8g00352 291 Pfam ATPase family associated with various cellular activities (AAA) 2 112 IPR003959 GO:0005524|GO:0016887
Vimu8g00352 291 PANTHER AAA DOMAIN-CONTAINING 115 188 - -
Vimu8g00352 291 Gene3D - 115 167 - -
Vimu8g00352 291 Pfam Vps4 C terminal oligomerisation domain 154 187 IPR015415 -
Vimu8g00352 291 Gene3D - 168 183 IPR027417 -
Vimu8g00352 291 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 186 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00352 Vimu-Chr8 8914689 8919674 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00352 2 202 Calmodulin-binding Proteins AT3G56690 23.333 1.57e-10 60.1