Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00338 ATGCGAATGAGTTGTAATGGGTGTCGTGTGTTGCGAAAAGGGTGCAGTGAAGATTGTAGCATAAGGCCGTGTTTGGAATGGATCGAGAACCCAGAATCGCAGGGTAATGCCACCGTTTTTCTTGCTAAGTTTTATGGTCGTGCTGGCCTCATGAATCTCATCAACGCTGGTCCTCAAAACCTTCGACCAGCGATTTTTCGTTCGTTGTTGTACGAGGCATGTGGTCGAATTGTGAACCCAATTTACGGGTCAGTGGGTTTGTTATGGTCGGGGAGCTGGCAGCTATGTCAAGCCGCCGTGGAAGCCGTTTTGAAAGGCGAGCCGATCACACCAATCACATCGGAAGTGGCGGCGAATGGGCGGGCCCCACCTCTGAAGGCATGCGACATTCGCCACGTGTCAAAAGACGAGAACTCGGCGAATCGGACTCAAAAGGCCAAGACTCGAATCCGGGTTAAGCGAACCGGCGGCGACGTTCTTAACAAACCGAAAGCCCCGACGGTGACCGGGTTTGTTCCGGATGAACCGGAGACGAACCAGACTACGAGTCATGAATCGGGACTGAGCCACTTGTCGGAAGCTGCAGCCATTGTGGAAGGAGAGAGTAAAGAGAGTGAAAGTGTGGTGTCGGTGGAAACTTGCAACCTATTTGGTGAGACAAAGACGAGTGATCGATTCGGTGAAACTAATGATGAAATTGGTTTGGAATTGAGGCTTGGGTTTGAACCGGTTTCACGTGAGCATCACATGGTTCCATTGAAGAAGAGAAGAATAGAAGTGAAAAGTAGCTGTGACTTAATGGAGTTAGGACTTGAGTCCTCGGCTTAG 828 0.5036 MRMSCNGCRVLRKGCSEDCSIRPCLEWIENPESQGNATVFLAKFYGRAGLMNLINAGPQNLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGEPITPITSEVAANGRAPPLKACDIRHVSKDENSANRTQKAKTRIRVKRTGGDVLNKPKAPTVTGFVPDEPETNQTTSHESGLSHLSEAAAIVEGESKESESVVSVETCNLFGETKTSDRFGETNDEIGLELRLGFEPVSREHHMVPLKKRRIEVKSSCDLMELGLESSA 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00338 275 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 238 - -
Vimu8g00338 275 MobiDBLite consensus disorder prediction 163 188 - -
Vimu8g00338 275 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Vimu8g00338 275 PIRSF AS2 1 270 IPR017414 -
Vimu8g00338 275 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Vimu8g00338 275 MobiDBLite consensus disorder prediction 173 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00338 Vimu-Chr8 8730303 8731643 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00338 1 264 AS2 family AT3G02550 59.848 8.12e-105 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu8g00338 LOB 2.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00338 - - gmx:100814175 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g00338 8 8730303 8731643 Vimu8g00338 8 8730303 8731643 ECH