Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00334 ATGAAGGTCTTAGACTCAAGGAAAAGGAAGAAAATTGAAGAAAAGAAGTCTAGGAACCGCCCGATGGAGGAGACACCCAGCAGTGAACGTCGGGCGGTAGACCCCTGCCACCGGGCGGTGGCGCGATTTAGGGTAAACCGCCAGGCGGCAAAAGTGCGATGCCGGGCGGTTCCCCACCACAACCACCAAAACACGGAGGATGAAGCTGCCAATGGCCGCGGCCAAAAGCACGATTGCGATGAGAACGCCGGCGCTGGAGGTGGCTCCTCCACACCCCCTCACGCCGGCGGAGAAGGCCAGGAACCTGGGTCCGGAGATGGAGGTGGAAGTGAAATGGCGAGAAGGCCGAGAGGAAGACCTGCAGGTTCCAAAAACAAGCCCAAACCACCCATTATCATCACAAGAGACAGTGCCAACGCTCTCCGATCCCATTTTATGGAAATCGCCAACGGCTGCGACATCATGGAGAGCGTCACCGCCTTCACCAGGCGGCGACAACGTGGTGTCTGTGTTCTCAGCGGCAGCGGCACCATCACTAACGTGACCCTCCGGCAGCCAGCTTCCCCTGGTGTCGTTGTGACCCTTCACGGAAGGTTCGAGATTCTATCCCTTTCCGGTTCATTTCTGCCGCCGCCGACTCCGCCTGCCACTTCAGGACTAGCCATTTACCTTGCTAGCGGACAAGGACAGGTAGTAGGTGGAAGCGTGGTGGGACCCCTTGTGGCTCAAGATCCTGTTGTTATCATGGCTGCTTCATTTGGTAATGCTGCTTATGAGAGACTACCCTTAGAGGAAGAGGAAGAGGAAGCTCCGGTACCGGGTCACTGGGAATTGCAGGGACACAGTAACAATCACAATCGGCAGCAACAACAGTCGCAAGAGCTTGTGGGAGATCCTAACAGTTCTTCTCTCTTCCACGGAGTTCCACAGAATCTTCTCAATTCGGTTCAATTACCTGCTGAGGGTTATTGGGGTGGCATTGCTCGCCCCCCTTTTTAA 999 0.5576 MKVLDSRKRKKIEEKKSRNRPMEETPSSERRAVDPCHRAVARFRVNRQAAKVRCRAVPHHNHQNTEDEAANGRGQKHDCDENAGAGGGSSTPPHAGGEGQEPGSGDGGGSEMARRPRGRPAGSKNKPKPPIIITRDSANALRSHFMEIANGCDIMESVTAFTRRRQRGVCVLSGSGTITNVTLRQPASPGVVVTLHGRFEILSLSGSFLPPPTPPATSGLAIYLASGQGQVVGGSVVGPLVAQDPVVIMAASFGNAAYERLPLEEEEEEAPVPGHWELQGHSNNHNRQQQQSQELVGDPNSSSLFHGVPQNLLNSVQLPAEGYWGGIARPPF 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00334 332 ProSiteProfiles PPC domain profile profile. 138 274 IPR005175 -
Vimu8g00334 332 MobiDBLite consensus disorder prediction 279 303 - -
Vimu8g00334 332 MobiDBLite consensus disorder prediction 1 36 - -
Vimu8g00334 332 MobiDBLite consensus disorder prediction 59 80 - -
Vimu8g00334 332 Pfam Plants and Prokaryotes Conserved (PCC) domain 142 254 IPR005175 -
Vimu8g00334 332 CDD DUF296 142 225 IPR005175 -
Vimu8g00334 332 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 68 312 IPR014476 GO:0003680
Vimu8g00334 332 Gene3D - 141 270 - -
Vimu8g00334 332 MobiDBLite consensus disorder prediction 264 303 - -
Vimu8g00334 332 MobiDBLite consensus disorder prediction 54 132 - -
Vimu8g00334 332 FunFam AT-hook motif nuclear-localized protein 141 268 - -
Vimu8g00334 332 SUPERFAMILY AF0104/ALDC/Ptd012-like 138 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00334 Vimu-Chr8 8648720 8652072 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00334 73 332 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 63.370 2.20e-83 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00334 - - gmx:100792957 424.091