Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00325 ATGAAGTTCAATCCTAGGGTTTCCCCTAGTCGACGCAAGAGTCGCAAGGTCCATTTCACGGCAATGTCAAGTGTCTGCCGTGTGCTGATGCGCACGTCGCTCTCAACGTACCTCTGGTCCAAATACAACGTGCGTTCCATTCTGGTTCGGAAGGATGACGAGATGCAAGTGGTTAGGGGAACCTTCAAGGGTCGCGAGGTGGAATCTTCCCCGACTACTGAATCCTTTTTTTATGCTTCATCAAACAGTCCACATGAAATCAAAGCAGGGATGGCGGCGAACAAAGCGAGAGCGACCCTGGACCATAAATGTGTTGTGACGGCTCGATGCTACGAACAACCTATGTGA 348 0.5057 MKFNPRVSPSRRKSRKVHFTAMSSVCRVLMRTSLSTYLWSKYNVRSILVRKDDEMQVVRGTFKGREVESSPTTESFFYASSNSPHEIKAGMAANKARATLDHKCVVTARCYEQPM 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00325 115 SUPERFAMILY Translation proteins SH3-like domain 9 66 IPR008991 -
Vimu8g00325 115 PANTHER 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER 1 66 IPR005756 GO:0003735|GO:0006412|GO:0015934
Vimu8g00325 115 Gene3D - 1 75 IPR014722 -
Vimu8g00325 115 NCBIfam 50S ribosomal protein L24 8 67 IPR005756 GO:0003735|GO:0006412|GO:0015934
Vimu8g00325 115 Pfam Ribosomal proteins L26 eukaryotic, L24P archaeal 8 67 IPR005756 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00325 Vimu-Chr8 8543249 8543596 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00325 1 66 Cytoplasmic Ribosomal Protein Gene Family AT5G67510 74.242 8.37e-28 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00325 K02898 - gmx:100819391 91.2781