Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00313 TTGCACGTTAAAACTGTGTGTGTGAAGAAGCACGATCTATTCCAATTTCCATCAACCTTCACAGACAAACAAACGAACACGGTCTTTCTCTCTGTGTATTTCATTTCTCCGCGTGATCAGAGAAAGAAAGGTCGAATGGCGACGAGGTACTGGGTAGTGTCTCTCCCCGTTCCGAATTCCGCATCCACTCTGTGGAACAAATTGCAGGAAGAAATCTCCAAACACTCCTTCGACACACCTCTTTACAGATTCAACATTCCTAATCTCCGCGTCGGAACCCTAGACTCTCTCCTCTCTCTCAGCGACGATCTCGTCAAGTCGAACAACTTCGTGGAGGGAGTGTCGCACAAGATCAGGCGACAGATTGATGATCTGGAGAGAGTGTCGGGCGCGGTGACCAGTAGTTTGACGGTGGATGGAGTCCCTGTTGATTCGTACTTGACGAGGTTTGCTTGGGATGAAGCCAGGTACCCGACTATGTCGCCGTTGAAGGAGACTGTGGATGGGATTCATGGTCAGGTGGCAAAGATTGAGGATGATCTCAAGGTTCGTGTTTCTGAGTATAACAATATCCGCAGTCAGCTTAATACCATCAATAGAAAGCAAACTGGAAGCTTAGCTGTGCGTGATCTTTCCAACTTGGTAAAACCTGAGGATATTATAACATCAGAAAATTTAACTACCCTACTTGCTATTGTTCCAAAGTATTCACAGAAGGATTGGCTCTCAAGCTATGAAACATTGACCAACTATGTGGTTCCCAGGTCTTCCAAGAAGTTGTATGAAGATAACGAATATGCTCTTTATACTGTAACACTATTCAGTCGTGTTGCAGACAATTTTAGAACTAGTGCACGAGAAAAAGGGTTCCAAATTCGTGATTTCGAATACAGTCCTGAATCACACGAGAGTCGCAAGCAAGAGTTAGAGAAATTGATAGATGACCAGGAAAGTTTGAGGTCCTCTCTGTTGCAGTGGTGTTATACTAGTTATGGAGAGGTTTTCAGCTCCTGGATGCACTTTTGTGCAGTACGCGTATTTACTGAGAGCATTCTGAGATATGGTCTTCCACCATCTTTCTTGGCATGTGTTTTAGCTCCATCAGTCAAATCTGAGAAGAAAGTACGCACTATCCTTGAAGGGTTGAGCGACAGCACAAACAGTGGTTACTGGAAGACCGAGGATGATGGGGTTGGGATGGCTGGCCTTGTAGCAGGTGATGGTGATGCCCACCCTTACGTCTCGTTCACTATCAATCTTGTTTGA 1266 0.4518 MHVKTVCVKKHDLFQFPSTFTDKQTNTVFLSVYFISPRDQRKKGRMATRYWVVSLPVPNSASTLWNKLQEEISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLVKSNNFVEGVSHKIRRQIDDLERVSGAVTSSLTVDGVPVDSYLTRFAWDEARYPTMSPLKETVDGIHGQVAKIEDDLKVRVSEYNNIRSQLNTINRKQTGSLAVRDLSNLVKPEDIITSENLTTLLAIVPKYSQKDWLSSYETLTNYVVPRSSKKLYEDNEYALYTVTLFSRVADNFRTSAREKGFQIRDFEYSPESHESRKQELEKLIDDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFTESILRYGLPPSFLACVLAPSVKSEKKVRTILEGLSDSTNSGYWKTEDDGVGMAGLVAGDGDAHPYVSFTINLV 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00313 421 SUPERFAMILY Vacuolar ATP synthase subunit C 46 420 IPR036132 GO:0015078|GO:0033180|GO:1902600
Vimu8g00313 421 FunFam V-type proton ATPase subunit C 208 296 - -
Vimu8g00313 421 Gene3D Vacuolar atp synthase subunit c; domain 1 52 379 - -
Vimu8g00313 421 Gene3D - 208 296 - -
Vimu8g00313 421 Pfam V-ATPase subunit C 50 414 IPR004907 GO:0033180|GO:0046961|GO:1902600
Vimu8g00313 421 Gene3D - 86 357 - -
Vimu8g00313 421 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 47 420 IPR004907 GO:0033180|GO:0046961|GO:1902600
Vimu8g00313 421 CDD V-ATPase_C 50 418 IPR004907 GO:0033180|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00313 Vimu-Chr8 8413199 8420972 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00313 46 420 Primary Pumps ATPases(2) AT1G12840 81.067 0.0 648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00313 K02148 - gmx:100803728 692.96