Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00307 ATGGCTCCTTCAGATTCTGAAACTTTGGGGCGCCATTCTCTGATTCCGAGCTTTCTCTATTCCTGCCCCTCTCCGCCGCAGAAGAAGATTGAAGCTTCAAGCTTCGCGGTTCGTTCTCCCAGTGAGAAACGCAGCATAGAGATGTTTTCGCCGGCGTTCTACGGTGCTTGCACCATCGGAGGAATCCTCAGCTGTGGCCCCACGCACACCGCCGTCACGCCTCTTGACGTTGTCAAATGCAACATACAGATTGACCCTGTCAAGTACAAGAACACCAGCACAGGATTTGGAGTCATGTTTAAGGAGCAAGGACTGAGGGGGTTTTACCGCGGATGGGCACCTACCCTTGTTGGTTACGGAGCACAGGGTGCCTTCAAATATGGATTGTATGAGTACTTCAAGAAGTACTATTCTGACATAGCTGGTCCAGAGTATGCAACGAAGTACAAGACATTGATTTACCTAGCCGGTTCAGCATCTTCTGAGTTGATTGCTGATGTTGCTCTTTGCCCATTTGAGGCTGTGAAGGTCAGAGTTCAAACTCAGCCTGGCTTTGCTAGAGGCCTAGCTGATGGACTCCCAAAGTTAGTCAGAACTGAAGGTGTCTCAGGGTATGCTTATGATGTTATAATTGTTGTTAACTTAAATCTTCCCATTGTTTTGGTAAGAAGGTTGAGTGAAGCTGTGATTCTGGATTCCTTGCAAGCTGTACAAGGGAATTATGCCTCTGTGGGGAAGACAGGTTCCATTAATTCCCAGCAACTAGGTGTGAGCATTGTCGGTGGATACATGGCCGGTATATTGTGTGCTGTCGTCTCCCATCCCGCTGATAATCTTGTCTCTTTCCTTAACAATTCCAAAGGGGCAAGCGTTGCTGATGCTGTAAAGAAGCTTGGACTATGGGGTATGTTTACCCGTGGTCTACCTCTTCGTATTCTTATGGTTGGAACTCTCACAGGAGCACAATGGGGAATATATGATTCATTCAAAGTTTTTGTGGGGCTGCCAACCACTGGCGGTGTTGCTCCTGCTCTTCCTCCTTCTGCTGCATAG 1053 0.4796 MAPSDSETLGRHSLIPSFLYSCPSPPQKKIEASSFAVRSPSEKRSIEMFSPAFYGACTIGGILSCGPTHTAVTPLDVVKCNIQIDPVKYKNTSTGFGVMFKEQGLRGFYRGWAPTLVGYGAQGAFKYGLYEYFKKYYSDIAGPEYATKYKTLIYLAGSASSELIADVALCPFEAVKVRVQTQPGFARGLADGLPKLVRTEGVSGYAYDVIIVVNLNLPIVLVRRLSEAVILDSLQAVQGNYASVGKTGSINSQQLGVSIVGGYMAGILCAVVSHPADNLVSFLNNSKGASVADAVKKLGLWGMFTRGLPLRILMVGTLTGAQWGIYDSFKVFVGLPTTGGVAPALPPSAA 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00307 350 ProSiteProfiles Solute carrier (Solcar) repeat profile. 253 332 IPR018108 -
Vimu8g00307 350 ProSiteProfiles Solute carrier (Solcar) repeat profile. 149 233 IPR018108 -
Vimu8g00307 350 Gene3D Mitochondrial carrier domain 54 207 IPR023395 -
Vimu8g00307 350 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 33 343 IPR044677 GO:0005315|GO:1990547
Vimu8g00307 350 Pfam Mitochondrial carrier protein 152 204 IPR018108 -
Vimu8g00307 350 Pfam Mitochondrial carrier protein 56 138 IPR018108 -
Vimu8g00307 350 SUPERFAMILY Mitochondrial carrier 57 327 IPR023395 -
Vimu8g00307 350 ProSiteProfiles Solute carrier (Solcar) repeat profile. 52 136 IPR018108 -
Vimu8g00307 350 Gene3D Mitochondrial carrier domain 229 334 IPR023395 -
Vimu8g00307 350 FunFam Phosphate carrier protein, mitochondrial 146 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00307 Vimu-Chr8 8329135 8332792 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00307 12 350 Chloroplast and Mitochondria Gene Families AT3G48850 59.392 1.56e-153 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00307 K15102 - gmx:100804257 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03665 6 34414535 34418450 Vimu8g00307 8 8329135 8332792 PCT