Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00284 ATGAGTTCCTACAAGTCATCGCCATCGTCCTCCAAAACCAAAAAGAAGCAAACCACAACACAAGACCATCACCAACATGAAACGGTTTGGGGAGGGAGGTATCTTGGTGTGAGGAGGAGGCCGTGGGGAAGGTATGCGGCGGAAATTCGGGACCCTTCCACCAAGGAAAGACATTGGTTGGGTACATTTGACACCGCAGAAGAGGCTGCTCTGGCTTATGACAGAGCGGCCCGCTCCATGCGTGGACCACGTGCCCGAACCAATTTCGTCTACCCGGATACTCCACCGGGTTCTTCCGTCACCACCATCCTCTCCCCTGATGAACAAACTCAAACTCAAATCCAAATCCATCAGGTGCAAGAAGACCTCTCGTCTTTACTGAACCCGAACCTCTTTTCACAATCTGACCCAAACCCGCAATTTTCCTTGGGCGGGTACTCGGGTGTAACGAACACTCCCACATTTTCTACCACCGAAGTTGTTTCGTCTGGTGGCTATAGCTATAGTTATGGTTACACCGAAGGAGGAAGCAACGTGGAGGATTCACATTCACACTCACATTCACATTCTCATTTTAATCTCTTTGATGATGGTGAAACGCAGCTTCCACCGTTGCCACCGGATATCACAAGCTCCATTGCCTATGAAACGGGGCATGGATTTTATGGAGACGGTGTTGGGTTTTCGGATCCGAGTTTTAGTTTGACTGATACCGGATCGAGTTACCCGTTTTCTGGGTTCGAATCGGGTGATTACGTGGTGCACAGTCCACTTTTCAGTGCAATGCCACCGGTGTCCGATAACGTGGCAATGGGTCACGAGGATTTTGATTTGGGAAGCTCTTCTTATTTCTTCCGAAATTAG 864 0.4942 MSSYKSSPSSSKTKKKQTTTQDHHQHETVWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGPRARTNFVYPDTPPGSSVTTILSPDEQTQTQIQIHQVQEDLSSLLNPNLFSQSDPNPQFSLGGYSGVTNTPTFSTTEVVSSGGYSYSYGYTEGGSNVEDSHSHSHSHSHFNLFDDGETQLPPLPPDITSSIAYETGHGFYGDGVGFSDPSFSLTDTGSSYPFSGFESGDYVVHSPLFSAMPPVSDNVAMGHEDFDLGSSSYFFRN 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00284 287 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 156 - -
Vimu8g00284 287 MobiDBLite consensus disorder prediction 1 15 - -
Vimu8g00284 287 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Vimu8g00284 287 MobiDBLite consensus disorder prediction 1 32 - -
Vimu8g00284 287 SUPERFAMILY DNA-binding domain 33 90 IPR016177 GO:0003677
Vimu8g00284 287 FunFam Ethylene-responsive transcription factor 2 33 91 - -
Vimu8g00284 287 Gene3D AP2/ERF domain 32 91 IPR036955 GO:0003700|GO:0006355
Vimu8g00284 287 MobiDBLite consensus disorder prediction 177 203 - -
Vimu8g00284 287 Pfam AP2 domain 34 82 IPR001471 GO:0003700|GO:0006355
Vimu8g00284 287 MobiDBLite consensus disorder prediction 180 194 - -
Vimu8g00284 287 CDD AP2 33 89 IPR001471 GO:0003700|GO:0006355
Vimu8g00284 287 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Vimu8g00284 287 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Vimu8g00284 287 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00284 Vimu-Chr8 7916896 7917759 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00284 9 276 AP2-EREBP Transcription Factor Family AT5G13910 44.610 7.22e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu8g00284 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00284 K09286 - gmx:100815668 405.216