Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00260 ATGACTGATCCTCACGCTTATCACAACAACCCATCTGGCGGTACCGATGCTGATGCACCAGAGGATGCTGGGGAAGATGTCAAGCTGAGGTCTAGGGACCAAAGACTGGCTCTGCAAGGTGAGCCTAAGTGTGTTATATGCGGCCGCTACGGTGAATACATATGTGATGAAACTGATGATGATGTTTGCAGTTTGGAATGCAAACAAGCACTGCTTGGAAGAATTGCGAAATCATTGGCTCCTTCTGGAAATCTTCTGCCACCTAAAAAGATTCCTATGGCTGATGATTGCTTTTATGTTAGTGATGCTGATAACAAATCAAGGACTGCATCTATGGCTAGTGATCTTAGAACGGAACTTGACATTCATGTGAAGGGTGATGTAGTGGCACCGGTTTTGTCATTCTCTGATTGTAACCTCCCTGATAAGCTACTCCACAATATAGAAGCAGCAGGATATGACATGCCTACACCTGTCCAGATGCAAGCAATTCCTGCTGCTTTGACGGGCAAAAACATGCTTGTTTTGGCCAATACTGGATCCGGGAAGTCTGCTTCGTTTCTTATTCCTATAGTTTCTCGTTGTGTGATTCATCGCCAGCAATATGTTTCAGTTAAGAAGAAGCCTTTGGTTATGGTGTTAACACCCGCCAGAGAGCTCTGTATACAGGTCGAAGAGCATGCTAAGATGCTTGGCAAGGGATTGCCTTTCAAAACTGCACTTGTGGTTGGCGGTGAGGCCATGGCTGGACAACTCCATCGCATTCAACAAGGGGTGGAATTGATTGTAGGAACCCCGGGAAGACTTGTTGATCTTCTAAGTAAGCACGAGATTGACTTAGATGATGTGATGACTTTTGTTGTGGATGAGGTGGACTGTATGCTGCAAAGGGGTTTTAGAGATCAGGTCATGCAGATATACAGGGCTCTGTCACAACCCCAGGTCTTGATGTATTGTGCGACAATGTCTAATGATTTAGAGAAGATGATTAACACTCTGGCGAAAGGTACAGTGATTATCTCTGTTGGAGAACCTAATAAAGCAAATAAGGCTGTGAAGCAGGTAGCTATTTGGGTTGAGTCAAAGCAAAAGAAACAGAAGTTGTTTGACATTTTGACAACTAAGAAGCATTTTAAGCCACCTGTTGTAGTATATGTGGGATCCAGACTTGGGGCAGATCTTCTGGCTAATGCAATTACAGTTGCCACTGGAATTAAAGCAGTTTCAATTCATGGGGAGAAGTCTATGAAGGAAAGGAGAGAAATAATGCAGTCCTTTCTTATTGGTGAGGTCCCAGTGGTTGTGGCTACTGGAGTTTTAGGCAGGGGGGTAGATCTGCTGGGTGTAAGACAGGTTATTGTATTTGACATGCCTAATTCCATTAAGGAATATGTACATCAGATTGGAAGGGCATCTAGAATGGGAGAAGAAGGTGAAGGTATAGTTTTTGTGAATGAGGAAAACAAGAATGTCTTTGCAGACTTAATTGATGTTCTGAAATCTGGTGGAGCAGCTGTTCCTCGGGAGCTTGCCAATTCACGGTACGCCACAGGATTTTTCTATGGTGGGAAGACTTCGAAAAAGAGAAAGAACACAGCATAG 1602 0.4388 MTDPHAYHNNPSGGTDADAPEDAGEDVKLRSRDQRLALQGEPKCVICGRYGEYICDETDDDVCSLECKQALLGRIAKSLAPSGNLLPPKKIPMADDCFYVSDADNKSRTASMASDLRTELDIHVKGDVVAPVLSFSDCNLPDKLLHNIEAAGYDMPTPVQMQAIPAALTGKNMLVLANTGSGKSASFLIPIVSRCVIHRQQYVSVKKKPLVMVLTPARELCIQVEEHAKMLGKGLPFKTALVVGGEAMAGQLHRIQQGVELIVGTPGRLVDLLSKHEIDLDDVMTFVVDEVDCMLQRGFRDQVMQIYRALSQPQVLMYCATMSNDLEKMINTLAKGTVIISVGEPNKANKAVKQVAIWVESKQKKQKLFDILTTKKHFKPPVVVYVGSRLGADLLANAITVATGIKAVSIHGEKSMKERREIMQSFLIGEVPVVVATGVLGRGVDLLGVRQVIVFDMPNSIKEYVHQIGRASRMGEEGEGIVFVNEENKNVFADLIDVLKSGGAAVPRELANSRYATGFFYGGKTSKKRKNTA 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00260 533 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 351 514 IPR001650 -
Vimu8g00260 533 FunFam DEAD-box ATP-dependent RNA helicase 41 24 81 - -
Vimu8g00260 533 CDD SF2_C_DEAD 352 484 - -
Vimu8g00260 533 Gene3D - 342 517 IPR027417 -
Vimu8g00260 533 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 164 340 IPR014001 -
Vimu8g00260 533 SMART helicmild6 393 475 IPR001650 -
Vimu8g00260 533 Gene3D - 98 341 IPR027417 -
Vimu8g00260 533 SMART ultradead3 152 355 IPR014001 -
Vimu8g00260 533 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 133 161 IPR014014 GO:0003724
Vimu8g00260 533 Pfam Helicase conserved C-terminal domain 365 475 IPR001650 -
Vimu8g00260 533 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 280 489 IPR027417 -
Vimu8g00260 533 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 342 IPR027417 -
Vimu8g00260 533 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 112 512 - -
Vimu8g00260 533 Gene3D - 24 80 - -
Vimu8g00260 533 Pfam DEAD/DEAH box helicase 157 328 IPR011545 GO:0003676|GO:0005524
Vimu8g00260 533 MobiDBLite consensus disorder prediction 1 25 - -
Vimu8g00260 533 Pfam HIT zinc finger 42 68 IPR007529 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00260 Vimu-Chr8 7497987 7499897 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00260 127 512 Eukaryotic Initiation Factors Gene Family AT3G19760 26.786 6.87e-52 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00260 K19466 - gmx:100784491 907.131