Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00256 ATGATGCTAGTCTTCCTGTCATCACAAACAATGGCTGATGGTCAAGAATCAGACAAGAACATTGAGATATGGAAGATCAAGAAATTGATCAAGGCATTGGAAGCTGCTAGAGGTAACGGTACCAGCATGATTTCCCTGATCATGCCTCCACGTGATCAAATATCTCGAGTCACTAAGATGTTGGGAGATGAATTTGGAACTGCTTCAAACATCAAAAGTAGGGTGAACCGACAGTCAGTGCTGGGAGCCATTACCTCTGCTCAGCAGAGGTTGAAACTATATAACAAGGTCCCTCCAAATGGGTTGGTTCTTTACACAGGAACCATCGTCACTGAAGATGGCAAGGAAAAGAAGGTGACAATTGATTTTGAACCTTTCAAGCCTATCAATGCATCATTGTACCTCTGTGATAACAAGTTTCACACAGAAGCTCTAAATGAACTTTTAGAATCTGATGACAAGTTTGGTTTCATTGTTATGGATGGAAATGGTACCCTTTTTGGGACCTTAAGTGGAAACACTCGTGAGGTGCTTCACAAATTTACTGTTGATCTTCCAAAGAAGCACGGTAGAGGAGGTCAATCAGCTTTGCGTTTTGCTCGTCTTAGGATGGAAAAACGGCACAACTATGTAAGAAAAACTGCAGAACTTGCTACTCAGTTTTTCATCAATCCTGCAACCAGTCAACCTAATGTTTCTGGACTTATACTGGCTGGTTCTGCTGACTTCAAGACTGAGCTGAGTCAGTCCGACATGTTTGACCCTCGGTTGCAAGCAAAAATATTGAATGTGGTGGATGTTTCTTACGGTGGGGAAAATGGATTCAATCAAGCTATTGAGTTATCTGCCGAGATTTTGTCAAATGTGAAGTTCATTCAAGAGAAACGCTTGATAGGGAAATATTTTGAGGAGATCAGTCAGGACACTGGGAGATATGTCTTTGGGGTTGATGACACTCTGAAGGCACTGGAGATGGGTGCTGTGGAAACACTCATTGTGTGGGAAAATTTGGATATTAATAGGTATGTGCTGAAAAATAGTGTCACTGGTGAGATTGTCATAAAGCACTTGGGCAAGGACCAAGAGAGTAATCAAAGCAACTTCCGTGATGCAGCAACCTCTGCAGAGTTGGAAGTTCAGGAGAAGATGCCCTTGCTTGAGTGGTTTGCCAATGAGTACAAACGATTTGGATGCTCCCTGGAATTTGTTACCAACAAATCTCAGGAAGGGTCACAGTTCTGTAGAGGGTTTGGTGGCATTGGTGGAATTCTTCGGTACCAGCTTGACATAAGATCATTTGATGAGTTATCTGATGAGGGAGAAGTGTCTGATTCTGATTTCTGA 1344 0.4241 MMLVFLSSQTMADGQESDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGRYVFGVDDTLKALEMGAVETLIVWENLDINRYVLKNSVTGEIVIKHLGKDQESNQSNFRDAATSAELEVQEKMPLLEWFANEYKRFGCSLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSFDELSDEGEVSDSDF 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00256 447 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 15 438 IPR004403 GO:0003747|GO:0006415
Vimu8g00256 447 Pfam eRF1 domain 3 291 428 IPR005142 -
Vimu8g00256 447 SUPERFAMILY L30e-like 288 430 IPR029064 -
Vimu8g00256 447 Gene3D eRF1 domain 2 146 287 IPR042226 -
Vimu8g00256 447 SMART eRF1_1_2 14 150 IPR005140 -
Vimu8g00256 447 FunFam Peptide chain release factor subunit 1 289 446 - -
Vimu8g00256 447 FunFam Eukaryotic peptide chain release factor subunit 1 12 145 - -
Vimu8g00256 447 NCBIfam peptide chain release factor aRF-1 22 427 IPR004403 GO:0003747|GO:0006415
Vimu8g00256 447 Gene3D eRF1 domain 1 7 145 IPR024049 -
Vimu8g00256 447 FunFam Eukaryotic peptide chain release factor subunit 1 146 287 - -
Vimu8g00256 447 SUPERFAMILY Translational machinery components 152 286 - -
Vimu8g00256 447 Pfam eRF1 domain 1 28 148 IPR005140 -
Vimu8g00256 447 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 16 150 IPR024049 -
Vimu8g00256 447 Pfam eRF1 domain 2 154 287 IPR005141 -
Vimu8g00256 447 Gene3D - 289 446 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00256 Vimu-Chr8 7444904 7449642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00256 11 446 Eukaryotic Initiation Factors Gene Family AT3G26618 93.135 0.0 838
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00256 K03265 - gmx:100786788 822.772