Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00250 ATGGGAAGTGCTTATGACCACGATTCTCCTCCTCTACTTGAAGACCTTAAGGTGACCATACACAACTCCTCCATGATTTTCCCATCCAAAGAGATTGAGAAAAAGTCCTTGTTCTTGTCCAACATAGACAAGGTCCTCACCTTTGATGTTGAAACGGTTCACTTCTTCGGACCCAACAAAGATTTTCCTCCACATGTTGTCACTGAAATACTCAAGAATGCCTTAGAGGATGCCCTTGTTGTTTATGACTTCTTGAATGGAAGATTGAAGGTACACCCTGAAACCAAAAGGTTAGAGATGGATTGTACTCCAGAAGGGGCAGGCTTTGTGGTCGCTTCCAGTGAATACAAACTGGACCAGATAGGGGACTTGGATTATCCAAACACAGCCTTTGCACAATTGGTTCACAAGAACAAGAATTTTCTTAAAGAGGGTGATGATCCACTGTGTGTTGCCCAGATAACATCCTTCAAATGTGGTGGTTTTGCCATTGGCATTTCCACAAGCCACACTAGCTTCGACGGCCTCAGTTTCAAGACCTTCCTTGACAACGTCGCTTCCATAGCCGCTAAAAAGCCCTTGGCCGTGACACCGTGCCATGACAGGCACCTGCTGGCAGCACGATCCCCGCCACGTGTCACCTTCCCACACCCGGAGATGCTGAAACTGAACGACCTCCCCAAGTCCAACATCTTCGAAGCTTCAACGGAAGAGCTTCACTTCAAGGTCTTTAAACTGACCTCAAACGACATCACGAAGCTGAAGGAAGAGGCGAGAAATTCAGTCGGTGGTGACAAAAGCACACGCATCACAGGCTTTAACGCTATCACCGCCCACATATGGAGATGCAAGGCACTGTCATGCGATGATGGTAGTAACCCTAATAGATCATCAACGATTCTGTATGCTGTGGATATTCGTTCGAGGTTGGAGCCTCCTTTGCCGAAATCTTACACGGGTAACGCAGTGTTAACGGCGTATGCCACAGCAACGTGTCGGGAGGTAGAAGAATGGCCGTTCATGAGGTTGGTTGAAAGAGTGCGTGAGGGTGCAACAAGGATGACGAATGAGTACGCAAGGTCGATCATTGACTGGGGAGAGATGAACAAAGGGTTTCCAAATGGAGAGGTTTTGGTGTCATCGTGGTGGAGATTAGGGTTTGAGGAGGTGGAGTTTCCATGGGGGAAGCCTAAGTATTGTTGCCCTGTGGTGTACCATAGGAAGGATATTATTCTGTTGTTTCCTCCTGTTGAGGGAGGAGGTGATGGGGTAAGTATTATTGTGGCTCTTCCTCCCAATGATATGAACAAATTCAATGCACTCTTCAATAAGTTTTTGGGTGTTTGA 1347 0.4707 MGSAYDHDSPPLLEDLKVTIHNSSMIFPSKEIEKKSLFLSNIDKVLTFDVETVHFFGPNKDFPPHVVTEILKNALEDALVVYDFLNGRLKVHPETKRLEMDCTPEGAGFVVASSEYKLDQIGDLDYPNTAFAQLVHKNKNFLKEGDDPLCVAQITSFKCGGFAIGISTSHTSFDGLSFKTFLDNVASIAAKKPLAVTPCHDRHLLAARSPPRVTFPHPEMLKLNDLPKSNIFEASTEELHFKVFKLTSNDITKLKEEARNSVGGDKSTRITGFNAITAHIWRCKALSCDDGSNPNRSSTILYAVDIRSRLEPPLPKSYTGNAVLTAYATATCREVEEWPFMRLVERVREGATRMTNEYARSIIDWGEMNKGFPNGEVLVSSWWRLGFEEVEFPWGKPKYCCPVVYHRKDIILLFPPVEGGGDGVSIIVALPPNDMNKFNALFNKFLGV 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00250 448 Gene3D - 227 445 IPR023213 -
Vimu8g00250 448 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 24 440 - -
Vimu8g00250 448 Pfam Transferase family 16 440 - -
Vimu8g00250 448 Gene3D - 16 221 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00250 Vimu-Chr8 7272416 7277701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00250 16 446 Monolignol Biosynthesis Gene Families AT5G48930 30.482 2.98e-51 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00250 K13065 - gmx:100305576 773.852