Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00246 ATGAACGATCTAATGACCAAGTCCTTCACCAGCTACGTGGATCTAAAGAAAGCTGCCATGAAAGACGTTGATTTGGAAGCGGGTATGGCTGTTCGTCCCGATGTGGAACTCACCTCTTCCATAACCCACTTGGACACAGACATGGGAATCTTCTTGGAAGAGGCTGAGAAGGTGAAGACTGAAATGGGGTCCCTCAGAGACATCCTCGGCAGCTTGCAGCAGGCCAACGAGGAGAGCAAGTCTCTGCATAAGGCTGAGGAGCTCAAGGCACTAAGGAAAAGGATCAACACCAACATTGTTGCTGTCCTAAGGAAGGCCAGGACGATTCGGACCCAGCTCGAGGAGATGGACCGGGCCAATGCCGCCAACCGGAGGCTCTCCGGTCTCAAGGATGGCACGCCGGCAATCTACCGGACCCGGATCGCTGTCACCAATGGGCTGAGGAAGAAGCTGAAGGAGCTAATGATGGAGTTTCAGGGTTTGAGGCAGAGGATGATGAGTGAATACAAGGATACTGTGGGGAGAAGGTACTTCACAGTGACTGGGGAGTACCCAGATGAAGAGGTGATTGAGAAGATCATTGCAAATGGTAATGAGGAAGAGGTTTTAGGGAAGGCGATTCAGGAGCATGGGAGAGGGAAGGTTCTGGAAACTGTGGTGGAGATTCAGGATAGACATGATGCTGCTAAGGAAGTGGAGAAGAGTTTGCTGGAGCTGCACCAGGTGTTTCTGGACATGGCTGTGATGGTTGAGGCACAGGGTGAGAAAATGGATGACATTGAGCATCATGTGTTGCACGCTTCGCACTATGTTAAGGATGGGACCAAGAATCTGCACACTGCAAAGCATTACCAGAAGAATAGCAGGAAGTGGATGTGTATTGGGATCATATTGCTGCTCATTCTTATTCTGGTTATTGTTATTCCTGTTGCCACCAGTTTAAGCGGTTCTTGA 954 0.5 MNDLMTKSFTSYVDLKKAAMKDVDLEAGMAVRPDVELTSSITHLDTDMGIFLEEAEKVKTEMGSLRDILGSLQQANEESKSLHKAEELKALRKRINTNIVAVLRKARTIRTQLEEMDRANAANRRLSGLKDGTPAIYRTRIAVTNGLRKKLKELMMEFQGLRQRMMSEYKDTVGRRYFTVTGEYPDEEVIEKIIANGNEEEVLGKAIQEHGRGKVLETVVEIQDRHDAAKEVEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKNLHTAKHYQKNSRKWMCIGIILLLILILVIVIPVATSLSGS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00246 317 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 219 281 IPR000727 -
Vimu8g00246 317 Gene3D - 44 173 - -
Vimu8g00246 317 SMART tSNARE_6 214 281 IPR000727 -
Vimu8g00246 317 FunFam Syntaxin 132 212 312 - -
Vimu8g00246 317 Pfam SNARE domain 256 307 IPR000727 -
Vimu8g00246 317 ProSitePatterns Syntaxin / epimorphin family signature. 225 265 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vimu8g00246 317 Coils Coil 144 164 - -
Vimu8g00246 317 Gene3D - 215 314 - -
Vimu8g00246 317 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 45 176 - -
Vimu8g00246 317 CDD SNARE_syntaxin1-like 218 278 - -
Vimu8g00246 317 Pfam Syntaxin 51 254 IPR006011 GO:0016020
Vimu8g00246 317 SUPERFAMILY t-snare proteins 46 274 IPR010989 GO:0016020|GO:0016192
Vimu8g00246 317 PANTHER SYNTAXIN 65 303 IPR045242 -
Vimu8g00246 317 CDD SynN 48 206 IPR006011 GO:0016020
Vimu8g00246 317 SMART SynN_4 43 170 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00246 Vimu-Chr8 7162815 7163851 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00246 1 317 SNARE and Associated Proteins AT1G08560 66.044 1.54e-135 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00246 K08486 - gmx:100816016 539.265